miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8678 5' -53.3 NC_002229.2 + 81203 0.66 0.987059
Target:  5'- aGGGGAAUGuCGgCGaUCCGAUguugCUGc -3'
miRNA:   3'- -UCCCUUGCuGCgGCaAGGCUAaa--GGC- -5'
8678 5' -53.3 NC_002229.2 + 12274 0.67 0.97482
Target:  5'- cGGGGACGAgacguUGCCGUU-CGA--UCCa -3'
miRNA:   3'- uCCCUUGCU-----GCGGCAAgGCUaaAGGc -5'
8678 5' -53.3 NC_002229.2 + 126439 0.67 0.97482
Target:  5'- cGGGGACGAgacguUGCCGUU-CGA--UCCa -3'
miRNA:   3'- uCCCUUGCU-----GCGGCAAgGCUaaAGGc -5'
8678 5' -53.3 NC_002229.2 + 174072 0.67 0.962952
Target:  5'- cGGGGGCugcgaGAUGCCGggCUGAgcUUUCCc -3'
miRNA:   3'- uCCCUUG-----CUGCGGCaaGGCU--AAAGGc -5'
8678 5' -53.3 NC_002229.2 + 138543 0.67 0.962952
Target:  5'- cGGGGGCugcgaGAUGCCGggCUGAgcUUUCCc -3'
miRNA:   3'- uCCCUUG-----CUGCGGCaaGGCU--AAAGGc -5'
8678 5' -53.3 NC_002229.2 + 138095 0.68 0.955752
Target:  5'- cGGGAGCGGCGCCc--CCGGggcaacccCCGc -3'
miRNA:   3'- uCCCUUGCUGCGGcaaGGCUaaa-----GGC- -5'
8678 5' -53.3 NC_002229.2 + 617 0.68 0.955752
Target:  5'- cGGGAGCGGCGCCc--CCGGggcaacccCCGc -3'
miRNA:   3'- uCCCUUGCUGCGGcaaGGCUaaa-----GGC- -5'
8678 5' -53.3 NC_002229.2 + 110492 0.72 0.78986
Target:  5'- -cGGAACGGCGUCGUUCCcuugGAUaUCCc -3'
miRNA:   3'- ucCCUUGCUGCGGCAAGG----CUAaAGGc -5'
8678 5' -53.3 NC_002229.2 + 860 0.77 0.531946
Target:  5'- uGGGAGCGACGCCGU-CCGcgcgCCc -3'
miRNA:   3'- uCCCUUGCUGCGGCAaGGCuaaaGGc -5'
8678 5' -53.3 NC_002229.2 + 137851 0.77 0.531946
Target:  5'- uGGGAGCGACGCCGU-CCGcgcgCCc -3'
miRNA:   3'- uCCCUUGCUGCGGCAaGGCuaaaGGc -5'
8678 5' -53.3 NC_002229.2 + 110300 1.08 0.007829
Target:  5'- aAGGGAACGACGCCGUUCCGAUUUCCGc -3'
miRNA:   3'- -UCCCUUGCUGCGGCAAGGCUAAAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.