Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8679 | 3' | -54.8 | NC_002229.2 | + | 125942 | 1.12 | 0.003299 |
Target: 5'- gGGGGCGGAGAACUGAAUCUCCACCGGu -3' miRNA: 3'- -CCCCGCCUCUUGACUUAGAGGUGGCC- -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 57489 | 0.7 | 0.841151 |
Target: 5'- uGGGGCGGAugaaagugauGAAUUGAAUaUCgACCGc -3' miRNA: 3'- -CCCCGCCU----------CUUGACUUAgAGgUGGCc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 28621 | 0.69 | 0.871605 |
Target: 5'- cGGGGCGaGGGAUaGAucuuUCUCCugauACCGGu -3' miRNA: 3'- -CCCCGCcUCUUGaCUu---AGAGG----UGGCC- -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 12445 | 0.69 | 0.878714 |
Target: 5'- aGGGGCGGAGGGCcgcgcagGggUCgCCGaCGa -3' miRNA: 3'- -CCCCGCCUCUUGa------CuuAGaGGUgGCc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 126267 | 0.69 | 0.878714 |
Target: 5'- aGGGGCGGAGGGCcgcgcagGggUCgCCGaCGa -3' miRNA: 3'- -CCCCGCCUCUUGa------CuuAGaGGUgGCc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 135679 | 0.68 | 0.910987 |
Target: 5'- aGGGGaaGGGAAUUGAAUUUCUACa-- -3' miRNA: 3'- -CCCCgcCUCUUGACUUAGAGGUGgcc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 3032 | 0.68 | 0.910987 |
Target: 5'- aGGGGaaGGGAAUUGAAUUUCUACa-- -3' miRNA: 3'- -CCCCgcCUCUUGACUUAGAGGUGgcc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 165962 | 0.66 | 0.954707 |
Target: 5'- uGGGGUGGGGGua-GAAUCUCC-CUu- -3' miRNA: 3'- -CCCCGCCUCUugaCUUAGAGGuGGcc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 165396 | 0.66 | 0.954707 |
Target: 5'- cGGGGgGGAuugGGGCUGuAUaaaUUCgACCGGa -3' miRNA: 3'- -CCCCgCCU---CUUGACuUA---GAGgUGGCC- -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 146653 | 0.66 | 0.954707 |
Target: 5'- uGGGGUGGGGGua-GAAUCUCC-CUu- -3' miRNA: 3'- -CCCCGCCUCUugaCUUAGAGGuGGcc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 147218 | 0.66 | 0.954707 |
Target: 5'- cGGGGgGGAuugGGGCUGuAUaaaUUCgACCGGa -3' miRNA: 3'- -CCCCgCCU---CUUGACuUA---GAGgUGGCC- -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 78691 | 0.66 | 0.961945 |
Target: 5'- gGGGGcCGGAGAGggcUUGAaAUCgggaUCCGgCGGa -3' miRNA: 3'- -CCCC-GCCUCUU---GACU-UAG----AGGUgGCC- -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 78409 | 0.66 | 0.961945 |
Target: 5'- gGGGGcCGGAGAGggcUUGAaAUCgggaUCCGgCGGa -3' miRNA: 3'- -CCCC-GCCUCUU---GACU-UAG----AGGUgGCC- -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 78475 | 0.66 | 0.961945 |
Target: 5'- gGGGGcCGGAGAGggcUUGAaAUCgggaUCCGgCGGa -3' miRNA: 3'- -CCCC-GCCUCUU---GACU-UAG----AGGUgGCC- -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 140234 | 0.66 | 0.965244 |
Target: 5'- uGGuaGGAGAGaucgGGAUCUCC-CCGa -3' miRNA: 3'- cCCcgCCUCUUga--CUUAGAGGuGGCc -5' |
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8679 | 3' | -54.8 | NC_002229.2 | + | 172380 | 0.66 | 0.965244 |
Target: 5'- uGGuaGGAGAGaucgGGAUCUCC-CCGa -3' miRNA: 3'- cCCcgCCUCUUga--CUUAGAGGuGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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