Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8679 | 5' | -54.4 | NC_002229.2 | + | 173496 | 0.66 | 0.962022 |
Target: 5'- aACUCGAuUCCGAuuacCGCaggUCAUCUCGGa -3' miRNA: 3'- -UGGGCU-AGGUUuc--GCG---AGUAGAGCCg -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 139118 | 0.66 | 0.962022 |
Target: 5'- aACUCGAuUCCGAuuacCGCaggUCAUCUCGGa -3' miRNA: 3'- -UGGGCU-AGGUUuc--GCG---AGUAGAGCCg -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 79675 | 0.67 | 0.941892 |
Target: 5'- aAUCCGAUCgAAAaCGCUUGcCUUGGCc -3' miRNA: 3'- -UGGGCUAGgUUUcGCGAGUaGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 43595 | 0.67 | 0.937167 |
Target: 5'- uGCCUGG-CCGaauGAGCGCUguaGUCUUGGg -3' miRNA: 3'- -UGGGCUaGGU---UUCGCGAg--UAGAGCCg -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 126898 | 0.67 | 0.927001 |
Target: 5'- cGCCauAUCCGAuugGCUCAcCUCGGCg -3' miRNA: 3'- -UGGgcUAGGUUucgCGAGUaGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 11815 | 0.67 | 0.927001 |
Target: 5'- cGCCauAUCCGAuugGCUCAcCUCGGCg -3' miRNA: 3'- -UGGgcUAGGUUucgCGAGUaGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 18656 | 0.68 | 0.915877 |
Target: 5'- aACCCGggUC-AAGCGCaCggCUUGGCg -3' miRNA: 3'- -UGGGCuaGGuUUCGCGaGuaGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 137927 | 0.68 | 0.909956 |
Target: 5'- aGCCCGGUCCcugcgcagguGGUGC-CcgCUgGGCg -3' miRNA: 3'- -UGGGCUAGGuu--------UCGCGaGuaGAgCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 785 | 0.68 | 0.909956 |
Target: 5'- aGCCCGGUCCcugcgcagguGGUGC-CcgCUgGGCg -3' miRNA: 3'- -UGGGCUAGGuu--------UCGCGaGuaGAgCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 140213 | 0.68 | 0.890785 |
Target: 5'- cCCCGAgauaacaguucUCCuugGAGCGUUCGcggcucUCUUGGCu -3' miRNA: 3'- uGGGCU-----------AGGu--UUCGCGAGU------AGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 172401 | 0.68 | 0.890785 |
Target: 5'- cCCCGAgauaacaguucUCCuugGAGCGUUCGcggcucUCUUGGCu -3' miRNA: 3'- uGGGCU-----------AGGu--UUCGCGAGU------AGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 130608 | 0.75 | 0.546136 |
Target: 5'- cCCCGcuacacGUCC---GCGUUCGUCUCGGCg -3' miRNA: 3'- uGGGC------UAGGuuuCGCGAGUAGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 8103 | 0.75 | 0.546136 |
Target: 5'- cCCCGcuacacGUCC---GCGUUCGUCUCGGCg -3' miRNA: 3'- uGGGC------UAGGuuuCGCGAGUAGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 166736 | 0.79 | 0.340468 |
Target: 5'- -aCCGGUCCAGggauuGGUGCUucCAUCUCGGCc -3' miRNA: 3'- ugGGCUAGGUU-----UCGCGA--GUAGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 145878 | 0.79 | 0.340468 |
Target: 5'- -aCCGGUCCAGggauuGGUGCUucCAUCUCGGCc -3' miRNA: 3'- ugGGCUAGGUU-----UCGCGA--GUAGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 12735 | 1.12 | 0.002838 |
Target: 5'- gACCCGAUCCAAAGCGCUCAUCUCGGCg -3' miRNA: 3'- -UGGGCUAGGUUUCGCGAGUAGAGCCG- -5' |
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8679 | 5' | -54.4 | NC_002229.2 | + | 125977 | 1.12 | 0.002838 |
Target: 5'- gACCCGAUCCAAAGCGCUCAUCUCGGCg -3' miRNA: 3'- -UGGGCUAGGUUUCGCGAGUAGAGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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