miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
868 3' -57.5 NC_000898.1 + 2204 0.66 0.82714
Target:  5'- -----cUCGGACGGGUcgGuCugCGCGGCg -3'
miRNA:   3'- uucgauAGCCUGUCCG--C-GugGUGCCG- -5'
868 3' -57.5 NC_000898.1 + 155371 0.66 0.82714
Target:  5'- -----cUCGGACGGGUcgGuCugCGCGGCg -3'
miRNA:   3'- uucgauAGCCUGUCCG--C-GugGUGCCG- -5'
868 3' -57.5 NC_000898.1 + 9017 0.66 0.82714
Target:  5'- gGGGCc--CGGGCgcgGGGCGCACC--GGCg -3'
miRNA:   3'- -UUCGauaGCCUG---UCCGCGUGGugCCG- -5'
868 3' -57.5 NC_000898.1 + 2675 0.67 0.792185
Target:  5'- cGGCUcGUCuucGACGGGCGUuauCgACGGCa -3'
miRNA:   3'- uUCGA-UAGc--CUGUCCGCGu--GgUGCCG- -5'
868 3' -57.5 NC_000898.1 + 155843 0.67 0.792185
Target:  5'- cGGCUcGUCuucGACGGGCGUuauCgACGGCa -3'
miRNA:   3'- uUCGA-UAGc--CUGUCCGCGu--GgUGCCG- -5'
868 3' -57.5 NC_000898.1 + 140130 0.68 0.754944
Target:  5'- aAAGUUAaaGGuCAGuGUGUACCGCGGUu -3'
miRNA:   3'- -UUCGAUagCCuGUC-CGCGUGGUGCCG- -5'
868 3' -57.5 NC_000898.1 + 145140 0.69 0.693028
Target:  5'- gAGGCUGUUGGACAGGCGguugagcauuaacaUACaaggaAUGGUc -3'
miRNA:   3'- -UUCGAUAGCCUGUCCGC--------------GUGg----UGCCG- -5'
868 3' -57.5 NC_000898.1 + 3042 0.7 0.62502
Target:  5'- aGGGCggcgCGGACgaGGGCGCcggcgggaacGCCACGGg -3'
miRNA:   3'- -UUCGaua-GCCUG--UCCGCG----------UGGUGCCg -5'
868 3' -57.5 NC_000898.1 + 156209 0.7 0.62502
Target:  5'- aGGGCggcgCGGACgaGGGCGCcggcgggaacGCCACGGg -3'
miRNA:   3'- -UUCGaua-GCCUG--UCCGCG----------UGGUGCCg -5'
868 3' -57.5 NC_000898.1 + 3654 0.7 0.614831
Target:  5'- gGGGCggAUCGGGCgggGGGCGCAgaGCGGa -3'
miRNA:   3'- -UUCGa-UAGCCUG---UCCGCGUggUGCCg -5'
868 3' -57.5 NC_000898.1 + 156822 0.7 0.614831
Target:  5'- gGGGCggAUCGGGCgggGGGCGCAgaGCGGa -3'
miRNA:   3'- -UUCGa-UAGCCUG---UCCGCGUggUGCCg -5'
868 3' -57.5 NC_000898.1 + 9277 0.71 0.584373
Target:  5'- cGGGCccuccUCGGgaACGaGCGCACCGCGGCc -3'
miRNA:   3'- -UUCGau---AGCC--UGUcCGCGUGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.