miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8685 5' -63.9 NC_002229.2 + 977 0.68 0.494591
Target:  5'- aCCUGCgcaGGGACcGGGCUCgagCGCCc-- -3'
miRNA:   3'- aGGACGg--CCCUGuCCCGAG---GCGGcac -5'
8685 5' -63.9 NC_002229.2 + 137734 0.68 0.494591
Target:  5'- aCCUGCgcaGGGACcGGGCUCgagCGCCc-- -3'
miRNA:   3'- aGGACGg--CCCUGuCCCGAG---GCGGcac -5'
8685 5' -63.9 NC_002229.2 + 138462 0.69 0.408541
Target:  5'- aCgUGgCGGGugGaaGGCUCCGCUGUGu -3'
miRNA:   3'- aGgACgGCCCugUc-CCGAGGCGGCAC- -5'
8685 5' -63.9 NC_002229.2 + 249 0.69 0.408541
Target:  5'- aCgUGgCGGGugGaaGGCUCCGCUGUGu -3'
miRNA:   3'- aGgACgGCCCugUc-CCGAGGCGGCAC- -5'
8685 5' -63.9 NC_002229.2 + 47930 0.71 0.298517
Target:  5'- cCCUGCCGGGACAauGGCaUCCgGCCa-- -3'
miRNA:   3'- aGGACGGCCCUGUc-CCG-AGG-CGGcac -5'
8685 5' -63.9 NC_002229.2 + 1099 1.07 0.000978
Target:  5'- cUCCUGCCGGGACAGGGCUCCGCCGUGc -3'
miRNA:   3'- -AGGACGGCCCUGUCCCGAGGCGGCAC- -5'
8685 5' -63.9 NC_002229.2 + 137613 1.07 0.000978
Target:  5'- cUCCUGCCGGGACAGGGCUCCGCCGUGc -3'
miRNA:   3'- -AGGACGGCCCUGUCCCGAGGCGGCAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.