Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 171236 | 0.67 | 0.950906 |
Target: 5'- gGAGGUUuaGugGGGGGuCGAACUUUcaUUGCc -3' miRNA: 3'- -CUCCGA--CugUCUCC-GCUUGAGA--AGCG- -5' |
|||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 141378 | 0.67 | 0.950906 |
Target: 5'- gGAGGUUuaGugGGGGGuCGAACUUUcaUUGCc -3' miRNA: 3'- -CUCCGA--CugUCUCC-GCUUGAGA--AGCG- -5' |
|||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 662 | 0.67 | 0.93736 |
Target: 5'- aGGGCgGAUGGGGGCGAgaggACcCcUCGCu -3' miRNA: 3'- cUCCGaCUGUCUCCGCU----UGaGaAGCG- -5' |
|||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 138049 | 0.67 | 0.93736 |
Target: 5'- aGGGCgGAUGGGGGCGAgaggACcCcUCGCu -3' miRNA: 3'- cUCCGaCUGUCUCCGCU----UGaGaAGCG- -5' |
|||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 18463 | 0.68 | 0.932362 |
Target: 5'- -cGGCUGcCAGAGGUGGuucgGCgCaUCGCu -3' miRNA: 3'- cuCCGACuGUCUCCGCU----UGaGaAGCG- -5' |
|||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 119843 | 0.7 | 0.845769 |
Target: 5'- -uGGCa-GCAGGGGCGAugUCaUCGUc -3' miRNA: 3'- cuCCGacUGUCUCCGCUugAGaAGCG- -5' |
|||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 738 | 1.13 | 0.002831 |
Target: 5'- cGAGGCUGACAGAGGCGAACUCUUCGCg -3' miRNA: 3'- -CUCCGACUGUCUCCGCUUGAGAAGCG- -5' |
|||||||
8686 | 3' | -53.8 | NC_002229.2 | + | 137973 | 1.13 | 0.002831 |
Target: 5'- cGAGGCUGACAGAGGCGAACUCUUCGCg -3' miRNA: 3'- -CUCCGACUGUCUCCGCUUGAGAAGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home