miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8689 3' -48.8 NC_002229.2 + 46233 0.67 0.996169
Target:  5'- uGUGGUc--CCGGGAGAUcuacaucUCCCGGg- -3'
miRNA:   3'- -UAUCAaaaGGUCCUCUAa------AGGGCCaa -5'
8689 3' -48.8 NC_002229.2 + 112033 0.68 0.991763
Target:  5'- -cAGUUUUCCGGGuuuGGAUccaCCGGUa -3'
miRNA:   3'- uaUCAAAAGGUCC---UCUAaagGGCCAa -5'
8689 3' -48.8 NC_002229.2 + 46441 0.69 0.982016
Target:  5'- uGUGGUc--CCGGGAGAUguagaucUCCCGGg- -3'
miRNA:   3'- -UAUCAaaaGGUCCUCUAa------AGGGCCaa -5'
8689 3' -48.8 NC_002229.2 + 172825 1.03 0.02996
Target:  5'- aAUAGUUUUCCAGGAGAUUUCCCGGUUu -3'
miRNA:   3'- -UAUCAAAAGGUCCUCUAAAGGGCCAA- -5'
8689 3' -48.8 NC_002229.2 + 139789 1.03 0.02996
Target:  5'- aAUAGUUUUCCAGGAGAUUUCCCGGUUu -3'
miRNA:   3'- -UAUCAAAAGGUCCUCUAAAGGGCCAA- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.