miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8690 5' -45.6 NC_002229.2 + 17062 0.71 0.998096
Target:  5'- aGCGACaaGAGGUCUuacacgugCUACGGGAaugUUACg -3'
miRNA:   3'- -CGUUGagCUCUAGA--------GAUGCUCU---AAUG- -5'
8690 5' -45.6 NC_002229.2 + 48057 0.67 0.999977
Target:  5'- uCGAgUCGAgGGUCUCguuuuaauggACGAGGUUAUu -3'
miRNA:   3'- cGUUgAGCU-CUAGAGa---------UGCUCUAAUG- -5'
8690 5' -45.6 NC_002229.2 + 108878 0.67 0.999968
Target:  5'- aGCGACUCGAaGcAUCUCaaAUGGGAcgACa -3'
miRNA:   3'- -CGUUGAGCU-C-UAGAGa-UGCUCUaaUG- -5'
8690 5' -45.6 NC_002229.2 + 124098 0.66 0.999996
Target:  5'- aCAGcCUCGAGAUUUCUACcaaaguGAGuccUACg -3'
miRNA:   3'- cGUU-GAGCUCUAGAGAUG------CUCua-AUG- -5'
8690 5' -45.6 NC_002229.2 + 140061 1.15 0.016205
Target:  5'- aGCAACUCGAGAUCUCUACGAGAUUACa -3'
miRNA:   3'- -CGUUGAGCUCUAGAGAUGCUCUAAUG- -5'
8690 5' -45.6 NC_002229.2 + 140184 0.92 0.29141
Target:  5'- gGCAACUCGAaAUCUCUACGAGAUaACa -3'
miRNA:   3'- -CGUUGAGCUcUAGAGAUGCUCUAaUG- -5'
8690 5' -45.6 NC_002229.2 + 140223 0.67 0.999977
Target:  5'- ----aUCGGGAUCUCccCGAGAUaACa -3'
miRNA:   3'- cguugAGCUCUAGAGauGCUCUAaUG- -5'
8690 5' -45.6 NC_002229.2 + 147978 0.68 0.999868
Target:  5'- cGCAgacuGCUCGGGugg-CUGCGGGAgggGCa -3'
miRNA:   3'- -CGU----UGAGCUCuagaGAUGCUCUaa-UG- -5'
8690 5' -45.6 NC_002229.2 + 164636 0.68 0.999868
Target:  5'- cGCAgacuGCUCGGGugg-CUGCGGGAgggGCa -3'
miRNA:   3'- -CGU----UGAGCUCuagaGAUGCUCUaa-UG- -5'
8690 5' -45.6 NC_002229.2 + 172391 0.67 0.999977
Target:  5'- ----aUCGGGAUCUCccCGAGAUaACa -3'
miRNA:   3'- cguugAGCUCUAGAGauGCUCUAaUG- -5'
8690 5' -45.6 NC_002229.2 + 172430 0.92 0.29141
Target:  5'- gGCAACUCGAaAUCUCUACGAGAUaACa -3'
miRNA:   3'- -CGUUGAGCUcUAGAGAUGCUCUAaUG- -5'
8690 5' -45.6 NC_002229.2 + 172553 1.15 0.016205
Target:  5'- aGCAACUCGAGAUCUCUACGAGAUUACa -3'
miRNA:   3'- -CGUUGAGCUCUAGAGAUGCUCUAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.