miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8692 5' -56.1 NC_002229.2 + 79727 0.66 0.910961
Target:  5'- cGCgGCuUGGGGGCGUGGaUACUACu -3'
miRNA:   3'- cUGgUGuAUCCUCGCGCCgGUGAUGu -5'
8692 5' -56.1 NC_002229.2 + 17453 0.69 0.778373
Target:  5'- aGGCCuggGCGUAGGAGUaCGGCUACaACu -3'
miRNA:   3'- -CUGG---UGUAUCCUCGcGCCGGUGaUGu -5'
8692 5' -56.1 NC_002229.2 + 67635 0.7 0.740235
Target:  5'- uAUCugGUGGGGGUuaugaGCGGCgCACUGCu -3'
miRNA:   3'- cUGGugUAUCCUCG-----CGCCG-GUGAUGu -5'
8692 5' -56.1 NC_002229.2 + 168731 1.08 0.00348
Target:  5'- gGACCACAUAGGAGCGCGGCCACUACAc -3'
miRNA:   3'- -CUGGUGUAUCCUCGCGCCGGUGAUGU- -5'
8692 5' -56.1 NC_002229.2 + 143883 1.08 0.00348
Target:  5'- gGACCACAUAGGAGCGCGGCCACUACAc -3'
miRNA:   3'- -CUGGUGUAUCCUCGCGCCGGUGAUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.