miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8693 5' -61.1 NC_002229.2 + 7957 0.66 0.747866
Target:  5'- ---uCCGGACCAGUAgCGGCgGGGg- -3'
miRNA:   3'- cgguGGCUUGGUCGUgGCCGgUCCgc -5'
8693 5' -61.1 NC_002229.2 + 130754 0.66 0.747866
Target:  5'- ---uCCGGACCAGUAgCGGCgGGGg- -3'
miRNA:   3'- cgguGGCUUGGUCGUgGCCGgUCCgc -5'
8693 5' -61.1 NC_002229.2 + 138550 0.66 0.729209
Target:  5'- aGCUACgCGcagaCAGC-CCGGCCAauaGGCGc -3'
miRNA:   3'- -CGGUG-GCuug-GUCGuGGCCGGU---CCGC- -5'
8693 5' -61.1 NC_002229.2 + 161 0.66 0.729209
Target:  5'- aGCUACgCGcagaCAGC-CCGGCCAauaGGCGc -3'
miRNA:   3'- -CGGUG-GCuug-GUCGuGGCCGGU---CCGC- -5'
8693 5' -61.1 NC_002229.2 + 170646 0.67 0.681365
Target:  5'- gGCCAgCGGACaCAGCACUGaCUacgGGGUGa -3'
miRNA:   3'- -CGGUgGCUUG-GUCGUGGCcGG---UCCGC- -5'
8693 5' -61.1 NC_002229.2 + 141968 0.67 0.681365
Target:  5'- gGCCAgCGGACaCAGCACUGaCUacgGGGUGa -3'
miRNA:   3'- -CGGUgGCUUG-GUCGUGGCcGG---UCCGC- -5'
8693 5' -61.1 NC_002229.2 + 140965 0.67 0.670681
Target:  5'- aGCCACCGcgucuaugucggaAGCCua-GCCGGUuuuaCAGGCGc -3'
miRNA:   3'- -CGGUGGC-------------UUGGucgUGGCCG----GUCCGC- -5'
8693 5' -61.1 NC_002229.2 + 149249 0.67 0.661913
Target:  5'- aCUA-CGAGCUAGCACCGGgaaAGGCa -3'
miRNA:   3'- cGGUgGCUUGGUCGUGGCCgg-UCCGc -5'
8693 5' -61.1 NC_002229.2 + 164478 0.67 0.661913
Target:  5'- aCCACCGAuacuuCCAGCaAUCGcCCcGGCGg -3'
miRNA:   3'- cGGUGGCUu----GGUCG-UGGCcGGuCCGC- -5'
8693 5' -61.1 NC_002229.2 + 163365 0.67 0.661913
Target:  5'- aCUA-CGAGCUAGCACCGGgaaAGGCa -3'
miRNA:   3'- cGGUgGCUUGGUCGUGGCCgg-UCCGc -5'
8693 5' -61.1 NC_002229.2 + 18652 0.67 0.65215
Target:  5'- uGCUAacCCGggUCaAGCGCaCGGCUuGGCGu -3'
miRNA:   3'- -CGGU--GGCuuGG-UCGUG-GCCGGuCCGC- -5'
8693 5' -61.1 NC_002229.2 + 365 0.68 0.622804
Target:  5'- cGCCuauugGCCGGGCUgucugcgcguAGCuAUUGGCCGGGCu -3'
miRNA:   3'- -CGG-----UGGCUUGG----------UCG-UGGCCGGUCCGc -5'
8693 5' -61.1 NC_002229.2 + 138347 0.68 0.622804
Target:  5'- cGCCuauugGCCGGGCUgucugcgcguAGCuAUUGGCCGGGCu -3'
miRNA:   3'- -CGG-----UGGCUUGG----------UCG-UGGCCGGUCCGc -5'
8693 5' -61.1 NC_002229.2 + 66010 0.68 0.613025
Target:  5'- aGCUuCCGAugCAGCACCGGCg----- -3'
miRNA:   3'- -CGGuGGCUugGUCGUGGCCGguccgc -5'
8693 5' -61.1 NC_002229.2 + 845 0.7 0.474729
Target:  5'- cGCgGCCGuGCCGGCGCCcaggcgccgaguccuGGCCuggacguguGGCGg -3'
miRNA:   3'- -CGgUGGCuUGGUCGUGG---------------CCGGu--------CCGC- -5'
8693 5' -61.1 NC_002229.2 + 137867 0.7 0.474729
Target:  5'- cGCgGCCGuGCCGGCGCCcaggcgccgaguccuGGCCuggacguguGGCGg -3'
miRNA:   3'- -CGgUGGCuUGGUCGUGG---------------CCGGu--------CCGC- -5'
8693 5' -61.1 NC_002229.2 + 144878 0.73 0.319064
Target:  5'- uGCCACCGccuGGCCGGUGCUGGUUcGGUGg -3'
miRNA:   3'- -CGGUGGC---UUGGUCGUGGCCGGuCCGC- -5'
8693 5' -61.1 NC_002229.2 + 167736 0.73 0.319064
Target:  5'- uGCCACCGccuGGCCGGUGCUGGUUcGGUGg -3'
miRNA:   3'- -CGGUGGC---UUGGUCGUGGCCGGuCCGC- -5'
8693 5' -61.1 NC_002229.2 + 144673 1.1 0.000966
Target:  5'- gGCCACCGAACCAGCACCGGCCAGGCGg -3'
miRNA:   3'- -CGGUGGCUUGGUCGUGGCCGGUCCGC- -5'
8693 5' -61.1 NC_002229.2 + 167942 1.1 0.000966
Target:  5'- gGCCACCGAACCAGCACCGGCCAGGCGg -3'
miRNA:   3'- -CGGUGGCUUGGUCGUGGCCGGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.