miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8694 3' -55.1 NC_002229.2 + 146209 0.66 0.939406
Target:  5'- --cUGGAuGAGGAUUGGuAUGggauUCCCGCu -3'
miRNA:   3'- gucAUCUcCUCCUGACC-UAC----AGGGCG- -5'
8694 3' -55.1 NC_002229.2 + 166405 0.66 0.939406
Target:  5'- --cUGGAuGAGGAUUGGuAUGggauUCCCGCu -3'
miRNA:   3'- gucAUCUcCUCCUGACC-UAC----AGGGCG- -5'
8694 3' -55.1 NC_002229.2 + 111355 0.69 0.826442
Target:  5'- aGGUGGAGGugggauaugggcAGGaACUGGAUGccgagcgCUCGCa -3'
miRNA:   3'- gUCAUCUCC------------UCC-UGACCUACa------GGGCG- -5'
8694 3' -55.1 NC_002229.2 + 145020 0.7 0.781436
Target:  5'- -cGUGGAGGAGGACgcccacgUGGgcGUCCUc- -3'
miRNA:   3'- guCAUCUCCUCCUG-------ACCuaCAGGGcg -5'
8694 3' -55.1 NC_002229.2 + 167595 0.7 0.781436
Target:  5'- -cGUGGAGGAGGACgcccacgUGGgcGUCCUc- -3'
miRNA:   3'- guCAUCUCCUCCUG-------ACCuaCAGGGcg -5'
8694 3' -55.1 NC_002229.2 + 61713 0.73 0.634593
Target:  5'- aUAGUAGAGGAaa--UGGAUG-CCCGCu -3'
miRNA:   3'- -GUCAUCUCCUccugACCUACaGGGCG- -5'
8694 3' -55.1 NC_002229.2 + 164876 1.11 0.003264
Target:  5'- cCAGUAGAGGAGGACUGGAUGUCCCGCc -3'
miRNA:   3'- -GUCAUCUCCUCCUGACCUACAGGGCG- -5'
8694 3' -55.1 NC_002229.2 + 147738 1.11 0.003264
Target:  5'- cCAGUAGAGGAGGACUGGAUGUCCCGCc -3'
miRNA:   3'- -GUCAUCUCCUCCUGACCUACAGGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.