miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8695 5' -46.1 NC_002229.2 + 170300 0.7 0.998991
Target:  5'- gCCCUCCCGGGGGAGuaucuGGAGCgGg- -3'
miRNA:   3'- -GGGGGGGUUUUUUUuuu--CCUUGgCac -5'
8695 5' -46.1 NC_002229.2 + 142314 0.7 0.998991
Target:  5'- gCCCUCCCGGGGGAGuaucuGGAGCgGg- -3'
miRNA:   3'- -GGGGGGGUUUUUUUuuu--CCUUGgCac -5'
8695 5' -46.1 NC_002229.2 + 32160 0.69 0.999335
Target:  5'- gCCCCCCAGccuGGGAuAGGugagacCCGUGu -3'
miRNA:   3'- gGGGGGGUUuu-UUUUuUCCuu----GGCAC- -5'
8695 5' -46.1 NC_002229.2 + 147399 0.68 0.99977
Target:  5'- uCCCCCCCGAGcccuccccAGGcuCCGUc -3'
miRNA:   3'- -GGGGGGGUUUuuuuuu--UCCuuGGCAc -5'
8695 5' -46.1 NC_002229.2 + 165215 0.68 0.99977
Target:  5'- uCCCCCCCGAGcccuccccAGGcuCCGUc -3'
miRNA:   3'- -GGGGGGGUUUuuuuuu--UCCuuGGCAc -5'
8695 5' -46.1 NC_002229.2 + 138694 0.68 0.999791
Target:  5'- aCCCCggCCCAcaGGAAGGGgcGGGGCaCGUGc -3'
miRNA:   3'- -GGGG--GGGU--UUUUUUUuuCCUUG-GCAC- -5'
8695 5' -46.1 NC_002229.2 + 17 0.68 0.999791
Target:  5'- aCCCCggCCCAcaGGAAGGGgcGGGGCaCGUGc -3'
miRNA:   3'- -GGGG--GGGU--UUUUUUUuuCCUUG-GCAC- -5'
8695 5' -46.1 NC_002229.2 + 122208 0.68 0.999875
Target:  5'- uCCgaCCCCAGAGAGGGA--GAGCCGg- -3'
miRNA:   3'- -GGg-GGGGUUUUUUUUUucCUUGGCac -5'
8695 5' -46.1 NC_002229.2 + 121714 0.68 0.999875
Target:  5'- uCCgaCCCCAGAGAGGGA--GAGCCGg- -3'
miRNA:   3'- -GGg-GGGGUUUUUUUUUucCUUGGCac -5'
8695 5' -46.1 NC_002229.2 + 150479 0.68 0.999902
Target:  5'- uUCCCCCCGccuauAGAGAGGuuaacccAGGAgacacGCUGUGg -3'
miRNA:   3'- -GGGGGGGUu----UUUUUUU-------UCCU-----UGGCAC- -5'
8695 5' -46.1 NC_002229.2 + 162135 0.68 0.999902
Target:  5'- uUCCCCCCGccuauAGAGAGGuuaacccAGGAgacacGCUGUGg -3'
miRNA:   3'- -GGGGGGGUu----UUUUUUU-------UCCU-----UGGCAC- -5'
8695 5' -46.1 NC_002229.2 + 143491 0.67 0.999927
Target:  5'- --aCCCCAAGAcccGAAAGGGACCcUGc -3'
miRNA:   3'- gggGGGGUUUUuu-UUUUCCUUGGcAC- -5'
8695 5' -46.1 NC_002229.2 + 169123 0.67 0.999927
Target:  5'- --aCCCCAAGAcccGAAAGGGACCcUGc -3'
miRNA:   3'- gggGGGGUUUUuu-UUUUCCUUGGcAC- -5'
8695 5' -46.1 NC_002229.2 + 133895 0.67 0.999944
Target:  5'- aCCCCCCCuccucccgaugcGGAGGAGCUuUGc -3'
miRNA:   3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5'
8695 5' -46.1 NC_002229.2 + 133772 0.67 0.999944
Target:  5'- aCCCCCCCuccucccgauacGGAGGAACUuUGc -3'
miRNA:   3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5'
8695 5' -46.1 NC_002229.2 + 4816 0.67 0.999944
Target:  5'- aCCCCCCCuccucccgaugcGGAGGAGCUuUGc -3'
miRNA:   3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5'
8695 5' -46.1 NC_002229.2 + 4939 0.67 0.999944
Target:  5'- aCCCCCCCuccucccgauacGGAGGAACUuUGc -3'
miRNA:   3'- -GGGGGGGuuuuuuu-----UUUCCUUGGcAC- -5'
8695 5' -46.1 NC_002229.2 + 132158 0.67 0.999945
Target:  5'- cCCCCCCCGuguuacAAAuucgcguuguuuGAGAuauGGGACgGUGg -3'
miRNA:   3'- -GGGGGGGU------UUU------------UUUUuu-CCUUGgCAC- -5'
8695 5' -46.1 NC_002229.2 + 6553 0.67 0.999945
Target:  5'- cCCCCCCCGuguuacAAAuucgcguuguuuGAGAuauGGGACgGUGg -3'
miRNA:   3'- -GGGGGGGU------UUU------------UUUUuu-CCUUGgCAC- -5'
8695 5' -46.1 NC_002229.2 + 10841 0.67 0.999951
Target:  5'- cCCCCCCCAcaaaaaaaaacaaaaAAAAAAAacugucuuauAAGGAGCa-UGg -3'
miRNA:   3'- -GGGGGGGU---------------UUUUUUU----------UUCCUUGgcAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.