miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8696 3' -60.8 NC_002229.2 + 164455 1.07 0.001536
Target:  5'- cAGUCUGCGAUACCGCGGGCCCCACCAc -3'
miRNA:   3'- -UCAGACGCUAUGGCGCCCGGGGUGGU- -5'
8696 3' -60.8 NC_002229.2 + 737 0.72 0.393722
Target:  5'- gGGcUCUGUGAguagACCGaaCGGGCCCC-CCGc -3'
miRNA:   3'- -UC-AGACGCUa---UGGC--GCCCGGGGuGGU- -5'
8696 3' -60.8 NC_002229.2 + 137939 0.72 0.399437
Target:  5'- ----cGCGggGCCGCgcuccgcaucucccGGGCCCCGCCGa -3'
miRNA:   3'- ucagaCGCuaUGGCG--------------CCCGGGGUGGU- -5'
8696 3' -60.8 NC_002229.2 + 137229 0.69 0.545703
Target:  5'- uGUCUGUcg-GCCGCgagagguuuuaGGGCCCCGCgGg -3'
miRNA:   3'- uCAGACGcuaUGGCG-----------CCCGGGGUGgU- -5'
8696 3' -60.8 NC_002229.2 + 159693 0.67 0.643471
Target:  5'- uGGUCUGUGAaaggUGCCGCucuCCCCAUCGu -3'
miRNA:   3'- -UCAGACGCU----AUGGCGcccGGGGUGGU- -5'
8696 3' -60.8 NC_002229.2 + 170454 0.67 0.692455
Target:  5'- cAGUgCUGUGu--CCGCuGGCCCgGCCu -3'
miRNA:   3'- -UCA-GACGCuauGGCGcCCGGGgUGGu -5'
8696 3' -60.8 NC_002229.2 + 126290 0.66 0.711778
Target:  5'- -aUCUGUGAUGCCGagaGGGUCaaACUAu -3'
miRNA:   3'- ucAGACGCUAUGGCg--CCCGGggUGGU- -5'
8696 3' -60.8 NC_002229.2 + 1482 0.69 0.545703
Target:  5'- uGUCUGUcg-GCCGCgagagguuuuaGGGCCCCGCgGg -3'
miRNA:   3'- uCAGACGcuaUGGCG-----------CCCGGGGUGgU- -5'
8696 3' -60.8 NC_002229.2 + 772 0.72 0.399437
Target:  5'- ----cGCGggGCCGCgcuccgcaucucccGGGCCCCGCCGa -3'
miRNA:   3'- ucagaCGCuaUGGCG--------------CCCGGGGUGGU- -5'
8696 3' -60.8 NC_002229.2 + 137975 0.72 0.393722
Target:  5'- gGGcUCUGUGAguagACCGaaCGGGCCCC-CCGc -3'
miRNA:   3'- -UC-AGACGCUa---UGGC--GCCCGGGGuGGU- -5'
8696 3' -60.8 NC_002229.2 + 148159 1.07 0.001536
Target:  5'- cAGUCUGCGAUACCGCGGGCCCCACCAc -3'
miRNA:   3'- -UCAGACGCUAUGGCGCCCGGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.