miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
87 5' -59.4 AC_000006.1 + 20852 0.73 0.119571
Target:  5'- uACaGCUUC-GAGUACGAGGCCAUGCu -3'
miRNA:   3'- -UGcUGGGGuCUCGUGCUCCGGUACGu -5'
87 5' -59.4 AC_000006.1 + 7599 0.71 0.172208
Target:  5'- aGCGAUCCCAGcguaAGCGCGcGGCUAgaucGCGa -3'
miRNA:   3'- -UGCUGGGGUC----UCGUGCuCCGGUa---CGU- -5'
87 5' -59.4 AC_000006.1 + 7409 0.68 0.244583
Target:  5'- -aGGuCCUCGGGGCAUugcAGGCCGUGCu -3'
miRNA:   3'- ugCU-GGGGUCUCGUGc--UCCGGUACGu -5'
87 5' -59.4 AC_000006.1 + 23616 0.68 0.269365
Target:  5'- cGCGACCCCcaggcccuGGAGCAgCGGcgcaagcucaugcuGGCCGUGg- -3'
miRNA:   3'- -UGCUGGGG--------UCUCGU-GCU--------------CCGGUACgu -5'
87 5' -59.4 AC_000006.1 + 22676 0.67 0.324117
Target:  5'- gUGGCCCCGGGGCGgaGuGGCCucucGCu -3'
miRNA:   3'- uGCUGGGGUCUCGUg-CuCCGGua--CGu -5'
87 5' -59.4 AC_000006.1 + 8347 0.66 0.332232
Target:  5'- cCGGCCCCGcGGGCA-GGGGCg--GCAg -3'
miRNA:   3'- uGCUGGGGU-CUCGUgCUCCGguaCGU- -5'
87 5' -59.4 AC_000006.1 + 23706 0.66 0.332232
Target:  5'- aGCGACCCCgAGAccuGCGCaAGGUCGaggagaccUGCAc -3'
miRNA:   3'- -UGCUGGGG-UCU---CGUGcUCCGGU--------ACGU- -5'
87 5' -59.4 AC_000006.1 + 9682 0.66 0.340496
Target:  5'- gACG-CCCCuGAgcggcuGCACGAGcGCCAggucgGCGa -3'
miRNA:   3'- -UGCuGGGGuCU------CGUGCUC-CGGUa----CGU- -5'
87 5' -59.4 AC_000006.1 + 7480 0.66 0.340496
Target:  5'- -gGAagCCCAGAGCuCGcGGGCCAUGa- -3'
miRNA:   3'- ugCUg-GGGUCUCGuGC-UCCGGUACgu -5'
87 5' -59.4 AC_000006.1 + 5373 0.67 0.31615
Target:  5'- -aGGCCCUAGAcagucGgGCGAGG-CGUGCGa -3'
miRNA:   3'- ugCUGGGGUCU-----CgUGCUCCgGUACGU- -5'
87 5' -59.4 AC_000006.1 + 19872 0.67 0.308332
Target:  5'- aGCGcCCCaCGGAGCGCGGaaguGGCCGcggacGCGg -3'
miRNA:   3'- -UGCuGGG-GUCUCGUGCU----CCGGUa----CGU- -5'
87 5' -59.4 AC_000006.1 + 11809 0.67 0.308332
Target:  5'- -gGGCCCCAGAGCGagGAGcGCgUcgGCGc -3'
miRNA:   3'- ugCUGGGGUCUCGUg-CUC-CG-GuaCGU- -5'
87 5' -59.4 AC_000006.1 + 26785 0.67 0.300663
Target:  5'- gUGGCCCCGcGcAGCuACG-GGCuCAUGCAa -3'
miRNA:   3'- uGCUGGGGU-C-UCG-UGCuCCG-GUACGU- -5'
87 5' -59.4 AC_000006.1 + 23398 0.67 0.285768
Target:  5'- gGCGGCCuCCAaGGCGCGccGGCUcgGCu -3'
miRNA:   3'- -UGCUGG-GGUcUCGUGCu-CCGGuaCGu -5'
87 5' -59.4 AC_000006.1 + 25047 0.68 0.271461
Target:  5'- cUGGCCCCGG-GCGCGccGGCCAcccaGCGc -3'
miRNA:   3'- uGCUGGGGUCuCGUGCu-CCGGUa---CGU- -5'
87 5' -59.4 AC_000006.1 + 31008 1.08 0.00023
Target:  5'- cACGACCCCAGAGCACGAGGCCAUGCAg -3'
miRNA:   3'- -UGCUGGGGUCUCGUGCUCCGGUACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.