Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8700 | 3' | -42 | NC_002229.2 | + | 172351 | 1.08 | 0.076674 |
Target: 5'- aCUGUAAUCUCGUAGAGAUCUCGAg -3' miRNA: 3'- -GACAUUAGAGCAUCUCUAGAGCU- -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 140263 | 1.08 | 0.076674 |
Target: 5'- aCUGUAAUCUCGUAGAGAUCUCGAg -3' miRNA: 3'- -GACAUUAGAGCAUCUCUAGAGCU- -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 172228 | 0.93 | 0.432471 |
Target: 5'- aCUGUuAUCUCGUAGAGAUUUCGAg -3' miRNA: 3'- -GACAuUAGAGCAUCUCUAGAGCU- -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 140386 | 0.93 | 0.432471 |
Target: 5'- aCUGUuAUCUCGUAGAGAUUUCGAg -3' miRNA: 3'- -GACAuUAGAGCAUCUCUAGAGCU- -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 140026 | 0.76 | 0.994255 |
Target: 5'- aCUGUuAUCUCGgGGAGAUCcCGAu -3' miRNA: 3'- -GACAuUAGAGCaUCUCUAGaGCU- -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 172588 | 0.76 | 0.994255 |
Target: 5'- aCUGUuAUCUCGgGGAGAUCcCGAu -3' miRNA: 3'- -GACAuUAGAGCaUCUCUAGaGCU- -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 140151 | 0.71 | 0.999951 |
Target: 5'- -cGUuGUCUCGUAGAGGUC-Ca- -3' miRNA: 3'- gaCAuUAGAGCAUCUCUAGaGcu -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 172463 | 0.71 | 0.999951 |
Target: 5'- -cGUuGUCUCGUAGAGGUC-Ca- -3' miRNA: 3'- gaCAuUAGAGCAUCUCUAGaGcu -5' |
|||||||
8700 | 3' | -42 | NC_002229.2 | + | 43578 | 0.67 | 1 |
Target: 5'- gCUGUAGUCUUGggaauGGGAUCUa-- -3' miRNA: 3'- -GACAUUAGAGCau---CUCUAGAgcu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home