miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8701 5' -47.2 NC_002229.2 + 172790 0.66 0.99982
Target:  5'- cGAAGCauGGAAAcgUCCUGGGAAAa- -3'
miRNA:   3'- -CUUUGgcCCUUUagAGGACCUUUUga -5'
8701 5' -47.2 NC_002229.2 + 139824 0.66 0.99982
Target:  5'- cGAAGCauGGAAAcgUCCUGGGAAAa- -3'
miRNA:   3'- -CUUUGgcCCUUUagAGGACCUUUUga -5'
8701 5' -47.2 NC_002229.2 + 130804 0.67 0.999733
Target:  5'- -cGGCCGGGuuugaUCCUGGAAuuaugaaaccgugccGACUg -3'
miRNA:   3'- cuUUGGCCCuuuagAGGACCUU---------------UUGA- -5'
8701 5' -47.2 NC_002229.2 + 7907 0.67 0.999733
Target:  5'- -cGGCCGGGuuugaUCCUGGAAuuaugaaaccgugccGACUg -3'
miRNA:   3'- cuUUGGCCCuuuagAGGACCUU---------------UUGA- -5'
8701 5' -47.2 NC_002229.2 + 165414 0.67 0.999706
Target:  5'- cGGAGCCuGGGGAGggCUCggGGggGAUUg -3'
miRNA:   3'- -CUUUGG-CCCUUUa-GAGgaCCuuUUGA- -5'
8701 5' -47.2 NC_002229.2 + 165997 0.67 0.999706
Target:  5'- cGAuuauCCGGGGAcAUUUCUggGGGGAGCUa -3'
miRNA:   3'- -CUuu--GGCCCUU-UAGAGGa-CCUUUUGA- -5'
8701 5' -47.2 NC_002229.2 + 147200 0.67 0.999706
Target:  5'- cGGAGCCuGGGGAGggCUCggGGggGAUUg -3'
miRNA:   3'- -CUUUGG-CCCUUUa-GAGgaCCuuUUGA- -5'
8701 5' -47.2 NC_002229.2 + 146618 0.67 0.999706
Target:  5'- cGAuuauCCGGGGAcAUUUCUggGGGGAGCUa -3'
miRNA:   3'- -CUuu--GGCCCUU-UAGAGGa-CCUUUUGA- -5'
8701 5' -47.2 NC_002229.2 + 172612 0.7 0.994628
Target:  5'- aGAGCCGcGAAcgCUCCaaGGAGAACUg -3'
miRNA:   3'- cUUUGGCcCUUuaGAGGa-CCUUUUGA- -5'
8701 5' -47.2 NC_002229.2 + 140002 0.7 0.994628
Target:  5'- aGAGCCGcGAAcgCUCCaaGGAGAACUg -3'
miRNA:   3'- cUUUGGCcCUUuaGAGGa-CCUUUUGA- -5'
8701 5' -47.2 NC_002229.2 + 50097 0.73 0.965249
Target:  5'- ----aUGGGAAAUCUUCUGGAAAGu- -3'
miRNA:   3'- cuuugGCCCUUUAGAGGACCUUUUga -5'
8701 5' -47.2 NC_002229.2 + 139992 1.1 0.020333
Target:  5'- cGAAACCGGGAAAUCUCCUGGAAAACUa -3'
miRNA:   3'- -CUUUGGCCCUUUAGAGGACCUUUUGA- -5'
8701 5' -47.2 NC_002229.2 + 172623 1.1 0.020333
Target:  5'- cGAAACCGGGAAAUCUCCUGGAAAACUa -3'
miRNA:   3'- -CUUUGGCCCUUUAGAGGACCUUUUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.