miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8704 5' -53.5 NC_002229.2 + 351 0.69 0.903799
Target:  5'- gCUGUCUGCGCguaGCUAUuggCCGGgcugunugCCg -3'
miRNA:   3'- gGACGGACGUGa--UGAUGua-GGCCa-------GG- -5'
8704 5' -53.5 NC_002229.2 + 1317 0.96 0.043825
Target:  5'- aCCUGCCUGCAUUACUACAUCCaGUUCg -3'
miRNA:   3'- -GGACGGACGUGAUGAUGUAGGcCAGG- -5'
8704 5' -53.5 NC_002229.2 + 43548 0.68 0.950635
Target:  5'- aCgGCCUaGCGCUACaaaAUaCUGGUCCg -3'
miRNA:   3'- gGaCGGA-CGUGAUGaugUA-GGCCAGG- -5'
8704 5' -53.5 NC_002229.2 + 47930 0.71 0.846425
Target:  5'- cCCUGCCgGgACaAUgGCAUCCGG-CCa -3'
miRNA:   3'- -GGACGGaCgUGaUGaUGUAGGCCaGG- -5'
8704 5' -53.5 NC_002229.2 + 60754 0.67 0.958451
Target:  5'- gCUGCuguaucgagCUGCACUGCUAUagAUgCGGaaUCCg -3'
miRNA:   3'- gGACG---------GACGUGAUGAUG--UAgGCC--AGG- -5'
8704 5' -53.5 NC_002229.2 + 137394 0.96 0.043825
Target:  5'- aCCUGCCUGCAUUACUACAUCCaGUUCg -3'
miRNA:   3'- -GGACGGACGUGAUGAUGUAGGcCAGG- -5'
8704 5' -53.5 NC_002229.2 + 138361 0.69 0.903799
Target:  5'- gCUGUCUGCGCguaGCUAUuggCCGGgcugunugCCg -3'
miRNA:   3'- gGACGGACGUGa--UGAUGua-GGCCa-------GG- -5'
8704 5' -53.5 NC_002229.2 + 138871 1.15 0.002402
Target:  5'- aCCUGCCUGCACUACUACAUCCGGUCCg -3'
miRNA:   3'- -GGACGGACGUGAUGAUGUAGGCCAGG- -5'
8704 5' -53.5 NC_002229.2 + 154787 0.66 0.979054
Target:  5'- aUCUGCCgggUGUACUACU-CAUUugaggUGGUUCg -3'
miRNA:   3'- -GGACGG---ACGUGAUGAuGUAG-----GCCAGG- -5'
8704 5' -53.5 NC_002229.2 + 173743 1.15 0.002402
Target:  5'- aCCUGCCUGCACUACUACAUCCGGUCCg -3'
miRNA:   3'- -GGACGGACGUGAUGAUGUAGGCCAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.