miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8723 5' -53.5 NC_002331.1 + 90134 0.66 0.972253
Target:  5'- aUCGCCA--GAGUauuuaacuucguucgCGCCCUC-CAGUAa -3'
miRNA:   3'- -AGCGGUugCUCA---------------GUGGGAGuGUCAUg -5'
8723 5' -53.5 NC_002331.1 + 66033 0.67 0.95794
Target:  5'- -aGCCugguACGAGUCACCgCU-GCcGUGCa -3'
miRNA:   3'- agCGGu---UGCUCAGUGG-GAgUGuCAUG- -5'
8723 5' -53.5 NC_002331.1 + 145758 0.68 0.941139
Target:  5'- aCGCCAugcgcAUGGGUCugCCgUACGcGUACg -3'
miRNA:   3'- aGCGGU-----UGCUCAGugGGaGUGU-CAUG- -5'
8723 5' -53.5 NC_002331.1 + 7837 0.7 0.867801
Target:  5'- uUCGCCAGCGAGaacaaugucuaUCcaGCCUUggcgcaugCGCAGUACa -3'
miRNA:   3'- -AGCGGUUGCUC-----------AG--UGGGA--------GUGUCAUG- -5'
8723 5' -53.5 NC_002331.1 + 13000 0.73 0.705268
Target:  5'- aUGCCGACGAGUU-UCCUCGCAGc-- -3'
miRNA:   3'- aGCGGUUGCUCAGuGGGAGUGUCaug -5'
8723 5' -53.5 NC_002331.1 + 44305 1.11 0.004118
Target:  5'- aUCGCCAACGAGUCACCCUCACAGUACa -3'
miRNA:   3'- -AGCGGUUGCUCAGUGGGAGUGUCAUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.