miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8724 5' -56.1 NC_002331.1 + 137324 0.66 0.93827
Target:  5'- uGCCACC-CCG-CAUGGGUuGAGg-- -3'
miRNA:   3'- cCGGUGGuGGCgGUGCCCAuUUCacu -5'
8724 5' -56.1 NC_002331.1 + 9258 0.66 0.93827
Target:  5'- cGGCCAau-CCGUCGuCGGGUAA--UGAg -3'
miRNA:   3'- -CCGGUgguGGCGGU-GCCCAUUucACU- -5'
8724 5' -56.1 NC_002331.1 + 101050 0.66 0.933448
Target:  5'- uGGCagUUugCGCCAUGGGUGGGGa-- -3'
miRNA:   3'- -CCGguGGugGCGGUGCCCAUUUCacu -5'
8724 5' -56.1 NC_002331.1 + 97208 0.66 0.933448
Target:  5'- aGUCGCCAUguaCGgCAgaGGGUGGAGUGGu -3'
miRNA:   3'- cCGGUGGUG---GCgGUg-CCCAUUUCACU- -5'
8724 5' -56.1 NC_002331.1 + 96828 0.67 0.905871
Target:  5'- uGGCCAaaAUUGCCAC-GGUAAGGUu- -3'
miRNA:   3'- -CCGGUggUGGCGGUGcCCAUUUCAcu -5'
8724 5' -56.1 NC_002331.1 + 146106 0.67 0.899667
Target:  5'- uGGUCAUCACCGCCAgauuuUGGG----GUGGc -3'
miRNA:   3'- -CCGGUGGUGGCGGU-----GCCCauuuCACU- -5'
8724 5' -56.1 NC_002331.1 + 71031 0.68 0.85017
Target:  5'- uGCCACCGCCuugagagauaacGCUGCGGGUAuuaauacGUGu -3'
miRNA:   3'- cCGGUGGUGG------------CGGUGCCCAUuu-----CACu -5'
8724 5' -56.1 NC_002331.1 + 9312 0.69 0.800249
Target:  5'- --gCACCGCCGcCCAUGGcG-AAAGUGAu -3'
miRNA:   3'- ccgGUGGUGGC-GGUGCC-CaUUUCACU- -5'
8724 5' -56.1 NC_002331.1 + 55209 0.69 0.800249
Target:  5'- gGGCU--CAUCGCUAUGGGUucaAAGGUGAc -3'
miRNA:   3'- -CCGGugGUGGCGGUGCCCA---UUUCACU- -5'
8724 5' -56.1 NC_002331.1 + 21503 0.7 0.735461
Target:  5'- cGCCACCACCGCCACcacGcAGAGUc- -3'
miRNA:   3'- cCGGUGGUGGCGGUGcc-CaUUUCAcu -5'
8724 5' -56.1 NC_002331.1 + 72623 0.76 0.416519
Target:  5'- -aCCACCACCGCCuGCGGGUAGGa--- -3'
miRNA:   3'- ccGGUGGUGGCGG-UGCCCAUUUcacu -5'
8724 5' -56.1 NC_002331.1 + 45022 1.03 0.00958
Target:  5'- uGGCCACCACCGCCACGGGU-AAGUGAa -3'
miRNA:   3'- -CCGGUGGUGGCGGUGCCCAuUUCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.