miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8729 3' -53.7 NC_002331.1 + 168988 0.66 0.967696
Target:  5'- cUAGCGCCGGU-GAGUgaagauuugaacguGUGUUCGUCGg -3'
miRNA:   3'- uGUCGUGGUCGuCUCG--------------UAUAGGCAGU- -5'
8729 3' -53.7 NC_002331.1 + 2135 0.66 0.965438
Target:  5'- aGCAGCAgCAGCAGcAGCAgcaaCGaCAa -3'
miRNA:   3'- -UGUCGUgGUCGUC-UCGUauagGCaGU- -5'
8729 3' -53.7 NC_002331.1 + 172671 0.66 0.962023
Target:  5'- cGCA-CACCAGCAGAGU-UAUUCGa-- -3'
miRNA:   3'- -UGUcGUGGUCGUCUCGuAUAGGCagu -5'
8729 3' -53.7 NC_002331.1 + 153257 0.67 0.931511
Target:  5'- -gAGCACgAGCAcGAGUGUGUgCCGUUc -3'
miRNA:   3'- ugUCGUGgUCGU-CUCGUAUA-GGCAGu -5'
8729 3' -53.7 NC_002331.1 + 41354 0.68 0.90866
Target:  5'- gGCAGCGCgGGCAGuuGCGguaaAUCCGgggugCAg -3'
miRNA:   3'- -UGUCGUGgUCGUCu-CGUa---UAGGCa----GU- -5'
8729 3' -53.7 NC_002331.1 + 130398 0.68 0.908038
Target:  5'- aACAGCACgacaaagUGGCAcGAcCGUGUCCGUCGg -3'
miRNA:   3'- -UGUCGUG-------GUCGU-CUcGUAUAGGCAGU- -5'
8729 3' -53.7 NC_002331.1 + 153401 0.69 0.867108
Target:  5'- aGCgAGUACCGGCAGAGU----UCGUCGg -3'
miRNA:   3'- -UG-UCGUGGUCGUCUCGuauaGGCAGU- -5'
8729 3' -53.7 NC_002331.1 + 152371 0.69 0.867108
Target:  5'- cCGGUAUUAGCGGAGCGgucuccugUAUCCGgCAg -3'
miRNA:   3'- uGUCGUGGUCGUCUCGU--------AUAGGCaGU- -5'
8729 3' -53.7 NC_002331.1 + 65452 0.72 0.752204
Target:  5'- gGCGGagaagcgucCACCGGUGGAGCGUAUUCGUgCAc -3'
miRNA:   3'- -UGUC---------GUGGUCGUCUCGUAUAGGCA-GU- -5'
8729 3' -53.7 NC_002331.1 + 94837 0.74 0.629248
Target:  5'- ---aUugCAGCAGAGCAUccacGUCCGUCGa -3'
miRNA:   3'- ugucGugGUCGUCUCGUA----UAGGCAGU- -5'
8729 3' -53.7 NC_002331.1 + 112162 1.09 0.004887
Target:  5'- aACAGCACCAGCAGAGCAUAUCCGUCAa -3'
miRNA:   3'- -UGUCGUGGUCGUCUCGUAUAGGCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.