miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8730 5' -49.8 NC_002331.1 + 169846 0.69 0.987928
Target:  5'- cGCGUcgcaGUACUAGUCGcgucuuggccguccGUUGACGCAUCu -3'
miRNA:   3'- aCGCA----CAUGGUUAGC--------------CGAUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 43858 0.69 0.985103
Target:  5'- -cCGUGUG---GUCGGCUGGCGCggaGCCg -3'
miRNA:   3'- acGCACAUgguUAGCCGAUUGUG---UGG- -5'
8730 5' -49.8 NC_002331.1 + 141911 0.69 0.98322
Target:  5'- aGCGUGUACUccGUCGcUUGAC-CGCCa -3'
miRNA:   3'- aCGCACAUGGu-UAGCcGAUUGuGUGG- -5'
8730 5' -49.8 NC_002331.1 + 62436 0.7 0.978453
Target:  5'- gGCGacacuucgaacgGUugCAcAUCGGCUGGCgaGCACCu -3'
miRNA:   3'- aCGCa-----------CAugGU-UAGCCGAUUG--UGUGG- -5'
8730 5' -49.8 NC_002331.1 + 111976 0.7 0.973861
Target:  5'- gGUGcUGUuguuaaacACUAAUCGGUUaaGACGCGCCu -3'
miRNA:   3'- aCGC-ACA--------UGGUUAGCCGA--UUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 65363 0.7 0.973861
Target:  5'- gUGCGUcgcacgUCAcgCGcGCUGGCACACCa -3'
miRNA:   3'- -ACGCAcau---GGUuaGC-CGAUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 174821 0.7 0.96797
Target:  5'- aUGCGUuuUACCAuuucuuUCGGUgGACACAUCa -3'
miRNA:   3'- -ACGCAc-AUGGUu-----AGCCGaUUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 153270 0.71 0.962622
Target:  5'- aGUGUGUGCCGuucGUCGaCUGGCcggugggugaaaagaACACCa -3'
miRNA:   3'- aCGCACAUGGU---UAGCcGAUUG---------------UGUGG- -5'
8730 5' -49.8 NC_002331.1 + 149945 0.71 0.961193
Target:  5'- cGUGUGUACCuAUCgacgagacgGGCU-GCACugCa -3'
miRNA:   3'- aCGCACAUGGuUAG---------CCGAuUGUGugG- -5'
8730 5' -49.8 NC_002331.1 + 11731 0.71 0.949266
Target:  5'- uUGgGUGUcggucugcugGCUAGUCGGCUAAuUACGCg -3'
miRNA:   3'- -ACgCACA----------UGGUUAGCCGAUU-GUGUGg -5'
8730 5' -49.8 NC_002331.1 + 124051 0.71 0.949266
Target:  5'- cUGUGUGUACgGGUCGGagagauCAgGCCg -3'
miRNA:   3'- -ACGCACAUGgUUAGCCgauu--GUgUGG- -5'
8730 5' -49.8 NC_002331.1 + 70621 0.74 0.879091
Target:  5'- gUGUGUGUGCaaaGUUGGCUAAUAUugUa -3'
miRNA:   3'- -ACGCACAUGgu-UAGCCGAUUGUGugG- -5'
8730 5' -49.8 NC_002331.1 + 149261 0.81 0.508379
Target:  5'- gGUGUGUuaGCCGAUUGGUacACGCACCg -3'
miRNA:   3'- aCGCACA--UGGUUAGCCGauUGUGUGG- -5'
8730 5' -49.8 NC_002331.1 + 149465 1.14 0.006585
Target:  5'- gUGCGUGUACCAAUCGGCUAACACACCg -3'
miRNA:   3'- -ACGCACAUGGUUAGCCGAUUGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.