miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8733 3' -45.4 NC_002331.1 + 147385 0.66 0.99999
Target:  5'- aUCAAAGGCGaauguucUGCUGA-AACGUUGa -3'
miRNA:   3'- aAGUUUUCGCga-----AUGACUaUUGCGAU- -5'
8733 3' -45.4 NC_002331.1 + 104118 0.66 0.999986
Target:  5'- aUCGu-AGCGCUU-CUGA-AACGCUu -3'
miRNA:   3'- aAGUuuUCGCGAAuGACUaUUGCGAu -5'
8733 3' -45.4 NC_002331.1 + 139219 0.66 0.999974
Target:  5'- -gCAAGAGUGCgUUAUUGAaauCGCUAc -3'
miRNA:   3'- aaGUUUUCGCG-AAUGACUauuGCGAU- -5'
8733 3' -45.4 NC_002331.1 + 168718 0.66 0.999964
Target:  5'- cUCAGAu-CGCUUugUGAcAugGCUAg -3'
miRNA:   3'- aAGUUUucGCGAAugACUaUugCGAU- -5'
8733 3' -45.4 NC_002331.1 + 6131 0.67 0.999882
Target:  5'- aUUCAGAuacgcGGCGCUUcaaACUGAUAcaaauaACGUUGu -3'
miRNA:   3'- -AAGUUU-----UCGCGAA---UGACUAU------UGCGAU- -5'
8733 3' -45.4 NC_002331.1 + 103923 0.68 0.999574
Target:  5'- uUUCAGAAGCGC-UAC-GAUGuuaguGCGCUc -3'
miRNA:   3'- -AAGUUUUCGCGaAUGaCUAU-----UGCGAu -5'
8733 3' -45.4 NC_002331.1 + 34764 0.7 0.998433
Target:  5'- uUUCAAGuguGGCGCga--UGAUGACGCa- -3'
miRNA:   3'- -AAGUUU---UCGCGaaugACUAUUGCGau -5'
8733 3' -45.4 NC_002331.1 + 25513 0.7 0.997701
Target:  5'- cUCAAGAuaaCGCUaucagUACUGAUAGCGUUAu -3'
miRNA:   3'- aAGUUUUc--GCGA-----AUGACUAUUGCGAU- -5'
8733 3' -45.4 NC_002331.1 + 67422 0.7 0.997239
Target:  5'- aUUCAAAcAGCuGCUugcucaaaUGCUGGUAGCGCa- -3'
miRNA:   3'- -AAGUUU-UCG-CGA--------AUGACUAUUGCGau -5'
8733 3' -45.4 NC_002331.1 + 109730 0.75 0.962865
Target:  5'- -aCAGAGGCGC-UGCUGGUAAaauUGCUGg -3'
miRNA:   3'- aaGUUUUCGCGaAUGACUAUU---GCGAU- -5'
8733 3' -45.4 NC_002331.1 + 25284 1.05 0.045622
Target:  5'- uUUCAAAAGCGCUUACUGAUAACGCUAu -3'
miRNA:   3'- -AAGUUUUCGCGAAUGACUAUUGCGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.