miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8735 3' -51.2 NC_002331.1 + 39339 0.66 0.992755
Target:  5'- --aGUGUG-AACa-GACGCUGGCugAu -3'
miRNA:   3'- uuaCACAUgUUGagCUGCGACCGugU- -5'
8735 3' -51.2 NC_002331.1 + 46870 0.66 0.991663
Target:  5'- ----cGUGCaAGCUCGACGCUGauuauuauguucGCACc -3'
miRNA:   3'- uuacaCAUG-UUGAGCUGCGAC------------CGUGu -5'
8735 3' -51.2 NC_002331.1 + 164976 0.66 0.991547
Target:  5'- uAAUGUuUACGAUcuuacugUCGACuGUUGGCACGu -3'
miRNA:   3'- -UUACAcAUGUUG-------AGCUG-CGACCGUGU- -5'
8735 3' -51.2 NC_002331.1 + 43737 0.66 0.98909
Target:  5'- --cGUGUAUAGaUUGuCGCUGaGCACAa -3'
miRNA:   3'- uuaCACAUGUUgAGCuGCGAC-CGUGU- -5'
8735 3' -51.2 NC_002331.1 + 62325 0.66 0.98909
Target:  5'- -----uUGCGACUCGGCGUUGGuCugAu -3'
miRNA:   3'- uuacacAUGUUGAGCUGCGACC-GugU- -5'
8735 3' -51.2 NC_002331.1 + 43829 0.67 0.985938
Target:  5'- --aGUGggcauUGCGACUUGGCGUcgacGGCGCAa -3'
miRNA:   3'- uuaCAC-----AUGUUGAGCUGCGa---CCGUGU- -5'
8735 3' -51.2 NC_002331.1 + 153269 0.67 0.984121
Target:  5'- gAGUGUGUGCcgUUCGuCGaCUGGC-CGg -3'
miRNA:   3'- -UUACACAUGuuGAGCuGC-GACCGuGU- -5'
8735 3' -51.2 NC_002331.1 + 48190 0.67 0.97996
Target:  5'- --cGUGUGCAAaaacaCGACGC-GGUACGu -3'
miRNA:   3'- uuaCACAUGUUga---GCUGCGaCCGUGU- -5'
8735 3' -51.2 NC_002331.1 + 66547 0.69 0.955073
Target:  5'- ----cGUACAGaacCGACGCgGGCACAg -3'
miRNA:   3'- uuacaCAUGUUga-GCUGCGaCCGUGU- -5'
8735 3' -51.2 NC_002331.1 + 98976 0.7 0.931789
Target:  5'- --cGUGUaccggaacaGCGGCUCGGcCGC-GGCACAa -3'
miRNA:   3'- uuaCACA---------UGUUGAGCU-GCGaCCGUGU- -5'
8735 3' -51.2 NC_002331.1 + 177256 0.7 0.920683
Target:  5'- aAAUGUGaauauauaacUACAAUUU-ACGCUGGCACGa -3'
miRNA:   3'- -UUACAC----------AUGUUGAGcUGCGACCGUGU- -5'
8735 3' -51.2 NC_002331.1 + 67288 1.07 0.010994
Target:  5'- cAAUGUGUACAACUCGACGCUGGCACAg -3'
miRNA:   3'- -UUACACAUGUUGAGCUGCGACCGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.