miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8737 3' -53.4 NC_002331.1 + 151902 0.66 0.975118
Target:  5'- cCAACUGAUgG-ACGCG-GCGGUGcGGCa -3'
miRNA:   3'- -GUUGACUGgCaUGCGCaUGCCGU-CUG- -5'
8737 3' -53.4 NC_002331.1 + 107760 0.67 0.966504
Target:  5'- ---gUGACCGUACGCcaggggaugGUACGGaauuGGCu -3'
miRNA:   3'- guugACUGGCAUGCG---------CAUGCCgu--CUG- -5'
8737 3' -53.4 NC_002331.1 + 158501 0.67 0.966504
Target:  5'- -cGCUGGCCGUAUGUucgAUGGguGGa -3'
miRNA:   3'- guUGACUGGCAUGCGca-UGCCguCUg -5'
8737 3' -53.4 NC_002331.1 + 45175 0.67 0.966504
Target:  5'- aCAGCggaUGACCGUucuCGuCGUACGGCu--- -3'
miRNA:   3'- -GUUG---ACUGGCAu--GC-GCAUGCCGucug -5'
8737 3' -53.4 NC_002331.1 + 107291 0.69 0.899323
Target:  5'- aCAAUUGuucAUCGUugGU--ACGGCAGACg -3'
miRNA:   3'- -GUUGAC---UGGCAugCGcaUGCCGUCUG- -5'
8737 3' -53.4 NC_002331.1 + 97387 0.71 0.823717
Target:  5'- aGGC--GCCGUACGUuUACGGCGGAUc -3'
miRNA:   3'- gUUGacUGGCAUGCGcAUGCCGUCUG- -5'
8737 3' -53.4 NC_002331.1 + 145742 0.74 0.660008
Target:  5'- --uCUG-CCGUACGCGUACGGuCAGu- -3'
miRNA:   3'- guuGACuGGCAUGCGCAUGCC-GUCug -5'
8737 3' -53.4 NC_002331.1 + 145539 1.09 0.006086
Target:  5'- aCAACUGACCGUACGCGUACGGCAGACc -3'
miRNA:   3'- -GUUGACUGGCAUGCGCAUGCCGUCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.