miRNA: 3'- -AAUGGACGGCaGGa---CGCGg-UUGGGua -5'
miRNA: 3'- aaUGGACGGCAGG----ACGCGGu--UGGGUa -5'
miRNA: 3'- aauGGaCGGCAGgA-CGCGGUUGGGUa -5'
miRNA: 3'- -AAUGGACGGCAGGACGCGGUUGGGUA- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 8737 | 5' | -59.1 | NC_002331.1 | + | 1431 | 0.66 | 0.739774 |
|
Target: 5'- aUUGCCUGUCGaCCgucgGCGCgaAACCCu- -3' miRNA: 3'- -AAUGGACGGCaGGa---CGCGg-UUGGGua -5' |
|||||||
| 8737 | 5' | -59.1 | NC_002331.1 | + | 51602 | 0.68 | 0.639759 |
|
Target: 5'- -cGCUUGCCGUUCacuaUGCGCUcguACCCGg -3' miRNA: 3'- aaUGGACGGCAGG----ACGCGGu--UGGGUa -5' |
|||||||
| 8737 | 5' | -59.1 | NC_002331.1 | + | 60758 | 0.7 | 0.529148 |
|
Target: 5'- --uCCgGUCGUCgUcGCGCCAACCCAc -3' miRNA: 3'- aauGGaCGGCAGgA-CGCGGUUGGGUa -5' |
|||||||
| 8737 | 5' | -59.1 | NC_002331.1 | + | 145579 | 1.03 | 0.003617 |
|
Target: 5'- gUUACCUGCCGUCCUGCGCCAACCCAUc -3' miRNA: 3'- -AAUGGACGGCAGGACGCGGUUGGGUA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home