miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8759 5' -55.4 NC_002363.1 + 3518 0.72 0.056495
Target:  5'- uGCGCCGUGUGGUuUGACUUACUg--- -3'
miRNA:   3'- -UGUGGCGCGCCAcACUGAAUGGagcu -5'
8759 5' -55.4 NC_002363.1 + 3221 0.74 0.040173
Target:  5'- aAUACgGCGCGaUGUGGCUUAUCUCa- -3'
miRNA:   3'- -UGUGgCGCGCcACACUGAAUGGAGcu -5'
8759 5' -55.4 NC_002363.1 + 4665 0.89 0.002332
Target:  5'- cACACCGCGCGGUGUGACa-ACCUCa- -3'
miRNA:   3'- -UGUGGCGCGCCACACUGaaUGGAGcu -5'
8759 5' -55.4 NC_002363.1 + 4644 1.08 0.000052
Target:  5'- cACACCGCGCGGUGUGACUUACCUCGAu -3'
miRNA:   3'- -UGUGGCGCGCCACACUGAAUGGAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.