miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8765 5' -47.1 NC_002371.2 + 40990 0.67 0.94056
Target:  5'- --aUGCC---GAGCACGCCcAUCugGa -3'
miRNA:   3'- caaACGGuaaCUUGUGCGGaUAGugU- -5'
8765 5' -47.1 NC_002371.2 + 7476 0.7 0.841584
Target:  5'- ---cGCCAgcggUGGuuGCGCCUGUCAgGg -3'
miRNA:   3'- caaaCGGUa---ACUugUGCGGAUAGUgU- -5'
8765 5' -47.1 NC_002371.2 + 24479 0.71 0.76878
Target:  5'- ---cGCCG-UGAGCACGCCgagugGUCAg- -3'
miRNA:   3'- caaaCGGUaACUUGUGCGGa----UAGUgu -5'
8765 5' -47.1 NC_002371.2 + 25822 0.73 0.675763
Target:  5'- -gUUGCuCAUUGGGCugGCCc-UCGCAu -3'
miRNA:   3'- caAACG-GUAACUUGugCGGauAGUGU- -5'
8765 5' -47.1 NC_002371.2 + 14099 1.1 0.003849
Target:  5'- aGUUUGCCAUUGAACACGCCUAUCACAu -3'
miRNA:   3'- -CAAACGGUAACUUGUGCGGAUAGUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.