miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8766 3' -53.3 NC_002371.2 + 7179 0.66 0.760592
Target:  5'- -uGCCAUcAUAGCGAUacucgaCCAGUuGGCCa -3'
miRNA:   3'- ucUGGUAaUGUCGCUG------GGUCGuCUGG- -5'
8766 3' -53.3 NC_002371.2 + 15983 0.66 0.749901
Target:  5'- -aACCAacGCAaCGACCCAGCuucGGCUg -3'
miRNA:   3'- ucUGGUaaUGUcGCUGGGUCGu--CUGG- -5'
8766 3' -53.3 NC_002371.2 + 31839 0.66 0.739083
Target:  5'- gAGAUCGUUACAGCuggcGCCCuGaAGuACCa -3'
miRNA:   3'- -UCUGGUAAUGUCGc---UGGGuCgUC-UGG- -5'
8766 3' -53.3 NC_002371.2 + 40403 0.66 0.728148
Target:  5'- uGAUUAUUGuuGCGuGCCCAGUAGGgCu -3'
miRNA:   3'- uCUGGUAAUguCGC-UGGGUCGUCUgG- -5'
8766 3' -53.3 NC_002371.2 + 27706 0.66 0.71378
Target:  5'- cGACCGUUauuacgucaaggccACAGCGACCauuaCAGAUg -3'
miRNA:   3'- uCUGGUAA--------------UGUCGCUGGguc-GUCUGg -5'
8766 3' -53.3 NC_002371.2 + 11941 0.67 0.683504
Target:  5'- -cGCCAUguugcCAGCGACgCCAGC--GCCu -3'
miRNA:   3'- ucUGGUAau---GUCGCUG-GGUCGucUGG- -5'
8766 3' -53.3 NC_002371.2 + 6151 0.67 0.671045
Target:  5'- gGGGCCgcagccccuguuaGUUacGCAGUcuGACCaGGCAGGCCa -3'
miRNA:   3'- -UCUGG-------------UAA--UGUCG--CUGGgUCGUCUGG- -5'
8766 3' -53.3 NC_002371.2 + 39255 0.68 0.626595
Target:  5'- gAGACU--UGCAgGCGcuuacGCCCAGCAGAa- -3'
miRNA:   3'- -UCUGGuaAUGU-CGC-----UGGGUCGUCUgg -5'
8766 3' -53.3 NC_002371.2 + 25188 0.68 0.59242
Target:  5'- cGACCuUUGCAGCGAaccaguuuUUCAGCAGcaGCUa -3'
miRNA:   3'- uCUGGuAAUGUCGCU--------GGGUCGUC--UGG- -5'
8766 3' -53.3 NC_002371.2 + 11641 0.7 0.514351
Target:  5'- cGGGCUGgugacUUACucacuGGCGGCCaguCAGCAGGCCa -3'
miRNA:   3'- -UCUGGU-----AAUG-----UCGCUGG---GUCGUCUGG- -5'
8766 3' -53.3 NC_002371.2 + 34733 0.7 0.471627
Target:  5'- aAGGCCu-----GCGAUuaCCAGCAGGCCu -3'
miRNA:   3'- -UCUGGuaauguCGCUG--GGUCGUCUGG- -5'
8766 3' -53.3 NC_002371.2 + 9880 0.72 0.411141
Target:  5'- cGGCUcUUGCAGCGGCaaaugCCAaCAGACCa -3'
miRNA:   3'- uCUGGuAAUGUCGCUG-----GGUcGUCUGG- -5'
8766 3' -53.3 NC_002371.2 + 25466 1.13 0.000556
Target:  5'- aAGACCAUUACAGCGACCCAGCAGACCg -3'
miRNA:   3'- -UCUGGUAAUGUCGCUGGGUCGUCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.