Results 1 - 20 of 20 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
878 | 3' | -59.9 | NC_000898.1 | + | 9027 | 0.66 | 0.802645 |
Target: 5'- cCGGGGGGGGggGGCccGGGcgcGGGGCGc -3' miRNA: 3'- -GCUCCCCCCa-CUG--CCUcuuCCCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 618 | 0.67 | 0.7208 |
Target: 5'- gCGGGuuGGGUGAUGGuGAGGGGuuGa -3' miRNA: 3'- -GCUCccCCCACUGCCuCUUCCCugCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 153786 | 0.67 | 0.7208 |
Target: 5'- gCGGGuuGGGUGAUGGuGAGGGGuuGa -3' miRNA: 3'- -GCUCccCCCACUGCCuCUUCCCugCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 25865 | 0.67 | 0.719848 |
Target: 5'- gCGGGGGGGaGUauggGACGGuAGAaguacuguggcugGGGGAUGc -3' miRNA: 3'- -GCUCCCCC-CA----CUGCC-UCU-------------UCCCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 156944 | 0.68 | 0.643079 |
Target: 5'- uCGAGuGGGGGUGAgaGGGacGGuGGACGg -3' miRNA: 3'- -GCUC-CCCCCACUg-CCUcuUC-CCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 3776 | 0.68 | 0.643079 |
Target: 5'- uCGAGuGGGGGUGAgaGGGacGGuGGACGg -3' miRNA: 3'- -GCUC-CCCCCACUg-CCUcuUC-CCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 2835 | 0.69 | 0.6303 |
Target: 5'- aGAGGGaGaaacggacacgcgcGGUGgACGGcGAGGGGACGg -3' miRNA: 3'- gCUCCC-C--------------CCAC-UGCCuCUUCCCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 156003 | 0.69 | 0.6303 |
Target: 5'- aGAGGGaGaaacggacacgcgcGGUGgACGGcGAGGGGACGg -3' miRNA: 3'- gCUCCC-C--------------CCAC-UGCCuCUUCCCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 2928 | 0.69 | 0.623418 |
Target: 5'- aCGAGGGagagacGGGagagGGCGGAGAcaacGGGGAgGg -3' miRNA: 3'- -GCUCCC------CCCa---CUGCCUCU----UCCCUgCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 156096 | 0.69 | 0.623418 |
Target: 5'- aCGAGGGagagacGGGagagGGCGGAGAcaacGGGGAgGg -3' miRNA: 3'- -GCUCCC------CCCa---CUGCCUCU----UCCCUgCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 157014 | 0.69 | 0.62047 |
Target: 5'- cCGAGGGGGcGUGGgaggagcguugccgUGGAGGcguucgGGGGACu- -3' miRNA: 3'- -GCUCCCCC-CACU--------------GCCUCU------UCCCUGca -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 3846 | 0.69 | 0.62047 |
Target: 5'- cCGAGGGGGcGUGGgaggagcguugccgUGGAGGcguucgGGGGACu- -3' miRNA: 3'- -GCUCCCCC-CACU--------------GCCUCU------UCCCUGca -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 663 | 0.7 | 0.564791 |
Target: 5'- aGAGGugacGGuagcGGUGGCGGuGGggGGGAUGUg -3' miRNA: 3'- gCUCC----CC----CCACUGCC-UCuuCCCUGCA- -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 153831 | 0.7 | 0.564791 |
Target: 5'- aGAGGugacGGuagcGGUGGCGGuGGggGGGAUGUg -3' miRNA: 3'- gCUCC----CC----CCACUGCC-UCuuCCCUGCA- -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 3366 | 0.72 | 0.456741 |
Target: 5'- gGuGGGGGcGUGuCGGAccucggguccuggacGGAGGGGCGUg -3' miRNA: 3'- gCuCCCCC-CACuGCCU---------------CUUCCCUGCA- -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 156533 | 0.72 | 0.456741 |
Target: 5'- gGuGGGGGcGUGuCGGAccucggguccuggacGGAGGGGCGUg -3' miRNA: 3'- gCuCCCCC-CACuGCCU---------------CUUCCCUGCA- -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 8189 | 0.75 | 0.291357 |
Target: 5'- gGAGGGGGGUguugugguaGAUGGgguaGGGAGGGAUGa -3' miRNA: 3'- gCUCCCCCCA---------CUGCC----UCUUCCCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 161356 | 0.75 | 0.291357 |
Target: 5'- gGAGGGGGGUguugugguaGAUGGgguaGGGAGGGAUGa -3' miRNA: 3'- gCUCCCCCCA---------CUGCC----UCUUCCCUGCa -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 3874 | 0.77 | 0.226386 |
Target: 5'- cCGGGGaGGGGgaugGAgGGAGggGGGACc- -3' miRNA: 3'- -GCUCC-CCCCa---CUgCCUCuuCCCUGca -5' |
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878 | 3' | -59.9 | NC_000898.1 | + | 157042 | 0.77 | 0.226386 |
Target: 5'- cCGGGGaGGGGgaugGAgGGAGggGGGACc- -3' miRNA: 3'- -GCUCC-CCCCa---CUgCCUCuuCCCUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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