miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8788 3' -54.1 NC_002484.1 + 15757 0.66 0.782531
Target:  5'- aGCaGCCGCccucUGuaGGC-CGCAGCGAUGa -3'
miRNA:   3'- -CG-CGGUGu---AUggCCGuGCGUUGCUAU- -5'
8788 3' -54.1 NC_002484.1 + 4878 0.66 0.778496
Target:  5'- gGCGCCGCcagagccGUcgauggaggugaugGCCGaGCGCGgCAugGAUAc -3'
miRNA:   3'- -CGCGGUG-------UA--------------UGGC-CGUGC-GUugCUAU- -5'
8788 3' -54.1 NC_002484.1 + 36429 0.66 0.751695
Target:  5'- cGUGCCGCAgccgauCCGGCGUGUGACa--- -3'
miRNA:   3'- -CGCGGUGUau----GGCCGUGCGUUGcuau -5'
8788 3' -54.1 NC_002484.1 + 5841 0.67 0.730493
Target:  5'- cGCGCCAgGUGCuCGG-AUGCAA-GGUAu -3'
miRNA:   3'- -CGCGGUgUAUG-GCCgUGCGUUgCUAU- -5'
8788 3' -54.1 NC_002484.1 + 6562 0.67 0.730493
Target:  5'- gGCGCCACAUgaAUUGGCAgGCcuCGu-- -3'
miRNA:   3'- -CGCGGUGUA--UGGCCGUgCGuuGCuau -5'
8788 3' -54.1 NC_002484.1 + 1168 0.67 0.730493
Target:  5'- cGUGCCccCAUGCCGGUcUGCAugGu-- -3'
miRNA:   3'- -CGCGGu-GUAUGGCCGuGCGUugCuau -5'
8788 3' -54.1 NC_002484.1 + 42756 0.67 0.719734
Target:  5'- cUGCCGCcgGUgGGCACGCuguGCGAg- -3'
miRNA:   3'- cGCGGUGuaUGgCCGUGCGu--UGCUau -5'
8788 3' -54.1 NC_002484.1 + 47846 0.67 0.719734
Target:  5'- gGCGCCGCgAUACCaaauuuGGCugGUG-CGAUu -3'
miRNA:   3'- -CGCGGUG-UAUGG------CCGugCGUuGCUAu -5'
8788 3' -54.1 NC_002484.1 + 9922 0.67 0.708887
Target:  5'- uUGCUGCAUcuCUGGCcucCGCAGCGGUGg -3'
miRNA:   3'- cGCGGUGUAu-GGCCGu--GCGUUGCUAU- -5'
8788 3' -54.1 NC_002484.1 + 27370 0.68 0.675928
Target:  5'- uGCGCCACAccUGCgCGGCAUGgcugguCAGCGc-- -3'
miRNA:   3'- -CGCGGUGU--AUG-GCCGUGC------GUUGCuau -5'
8788 3' -54.1 NC_002484.1 + 48823 0.68 0.675928
Target:  5'- uGCGgUGCuucUGCCGGCGgGCAAUGGa- -3'
miRNA:   3'- -CGCgGUGu--AUGGCCGUgCGUUGCUau -5'
8788 3' -54.1 NC_002484.1 + 48789 0.68 0.673714
Target:  5'- uCGCgGCAUcgucaugACCGGCACGUcgcucacGGCGAUc -3'
miRNA:   3'- cGCGgUGUA-------UGGCCGUGCG-------UUGCUAu -5'
8788 3' -54.1 NC_002484.1 + 33379 0.68 0.664841
Target:  5'- aGCGCgACAUGCUcgGGCaaGCGCucgGCGAg- -3'
miRNA:   3'- -CGCGgUGUAUGG--CCG--UGCGu--UGCUau -5'
8788 3' -54.1 NC_002484.1 + 11202 0.68 0.631436
Target:  5'- uUGCCguGCGUAUUGGCguagaGCGCGGCGAg- -3'
miRNA:   3'- cGCGG--UGUAUGGCCG-----UGCGUUGCUau -5'
8788 3' -54.1 NC_002484.1 + 38346 0.69 0.609151
Target:  5'- uGCGCCGCcgGCuCGacGC-CGCAGCGGa- -3'
miRNA:   3'- -CGCGGUGuaUG-GC--CGuGCGUUGCUau -5'
8788 3' -54.1 NC_002484.1 + 3437 0.69 0.609151
Target:  5'- uGCGCCAUagugcuGUACCaGGCAgCGCGACc--- -3'
miRNA:   3'- -CGCGGUG------UAUGG-CCGU-GCGUUGcuau -5'
8788 3' -54.1 NC_002484.1 + 34613 0.69 0.564899
Target:  5'- aCGCUGCAUugCGGCGCG--GCGGa- -3'
miRNA:   3'- cGCGGUGUAugGCCGUGCguUGCUau -5'
8788 3' -54.1 NC_002484.1 + 11442 0.76 0.25692
Target:  5'- uGCGCCACuuuuccgACCGGCGCuCGGCGGc- -3'
miRNA:   3'- -CGCGGUGua-----UGGCCGUGcGUUGCUau -5'
8788 3' -54.1 NC_002484.1 + 553 1 0.005102
Target:  5'- aGCGCCACAUACCGGC-CGCAACGAUAg -3'
miRNA:   3'- -CGCGGUGUAUGGCCGuGCGUUGCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.