miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8788 5' -53.7 NC_002484.1 + 19814 0.66 0.737173
Target:  5'- uGACAUCGCUAGCGUAgUaGUUGg---- -3'
miRNA:   3'- -CUGUAGCGAUCGCAUgA-CAGCgcguu -5'
8788 5' -53.7 NC_002484.1 + 8207 0.66 0.747915
Target:  5'- aGGCAgCGCUGGCGaugUACUcaggcaguggGUUGCGCGu -3'
miRNA:   3'- -CUGUaGCGAUCGC---AUGA----------CAGCGCGUu -5'
8788 5' -53.7 NC_002484.1 + 41695 0.67 0.670807
Target:  5'- aGAUAUCGCUGGcCGaGCUGcUCGcCGCc- -3'
miRNA:   3'- -CUGUAGCGAUC-GCaUGAC-AGC-GCGuu -5'
8788 5' -53.7 NC_002484.1 + 41748 0.68 0.659541
Target:  5'- cGACcgcgCGCUGGCGaugGCUGUUGCugacGCAGg -3'
miRNA:   3'- -CUGua--GCGAUCGCa--UGACAGCG----CGUU- -5'
8788 5' -53.7 NC_002484.1 + 517 1.06 0.001851
Target:  5'- cGACAUCGCUAGCGUACUGUCGCGCAAu -3'
miRNA:   3'- -CUGUAGCGAUCGCAUGACAGCGCGUU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.