miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8789 3' -52 NC_002484.1 + 932 1.12 0.001361
Target:  5'- aCGGAAAACCUCGAAGGCCUGCUUCUCg -3'
miRNA:   3'- -GCCUUUUGGAGCUUCCGGACGAAGAG- -5'
8789 3' -52 NC_002484.1 + 14390 0.7 0.670806
Target:  5'- uCGGAugGGGCCUgGAGGGCCgaGUaaUCUCg -3'
miRNA:   3'- -GCCU--UUUGGAgCUUCCGGa-CGa-AGAG- -5'
8789 3' -52 NC_002484.1 + 5662 0.69 0.704325
Target:  5'- uCGGGgcgauAGACCgCGAAGGCCaGCcgCUCc -3'
miRNA:   3'- -GCCU-----UUUGGaGCUUCCGGaCGaaGAG- -5'
8789 3' -52 NC_002484.1 + 11285 0.67 0.80933
Target:  5'- aGGcccAggUCUCGAGGGCCUGa-UCUa -3'
miRNA:   3'- gCCu--UuuGGAGCUUCCGGACgaAGAg -5'
8789 3' -52 NC_002484.1 + 50152 0.67 0.81704
Target:  5'- uGGGAAGCCUUGccGGCacagugggagaaUGCUUCa- -3'
miRNA:   3'- gCCUUUUGGAGCuuCCGg-----------ACGAAGag -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.