miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8791 3' -61.9 NC_002484.1 + 9910 0.66 0.334013
Target:  5'- uGGCC-UCC-GCAGCGGUGGCUgagaaaaUGuCCAc -3'
miRNA:   3'- -UCGGuAGGuCGUCGCCGUCGG-------AC-GGU- -5'
8791 3' -61.9 NC_002484.1 + 4001 0.66 0.330065
Target:  5'- cGCCAUggcgaugaaagaggCGGCAGaGGCAGCCagGCCGa -3'
miRNA:   3'- uCGGUAg-------------GUCGUCgCCGUCGGa-CGGU- -5'
8791 3' -61.9 NC_002484.1 + 13077 0.66 0.326932
Target:  5'- cGCCAUCCAGcCAGuuGCucugAGCCUcauccugaGCCGc -3'
miRNA:   3'- uCGGUAGGUC-GUCgcCG----UCGGA--------CGGU- -5'
8791 3' -61.9 NC_002484.1 + 26582 0.67 0.304136
Target:  5'- cGCCGcucggCCAGCAGCGcGCGGaCCUugGUCu -3'
miRNA:   3'- uCGGUa----GGUCGUCGC-CGUC-GGA--CGGu -5'
8791 3' -61.9 NC_002484.1 + 48689 0.67 0.304136
Target:  5'- gAGCCGUCCuugagauucuGCAGgGGUAuuccGCCgacgGCCGc -3'
miRNA:   3'- -UCGGUAGGu---------CGUCgCCGU----CGGa---CGGU- -5'
8791 3' -61.9 NC_002484.1 + 13488 0.68 0.262256
Target:  5'- cGGUgAUgCCGGCAGCcgaaGCAGCCgccGCCGg -3'
miRNA:   3'- -UCGgUA-GGUCGUCGc---CGUCGGa--CGGU- -5'
8791 3' -61.9 NC_002484.1 + 5281 0.68 0.262256
Target:  5'- cGCCAcUCGGCGGCGcGUAGgCCUGUg- -3'
miRNA:   3'- uCGGUaGGUCGUCGC-CGUC-GGACGgu -5'
8791 3' -61.9 NC_002484.1 + 36440 0.68 0.255749
Target:  5'- aGGUUAUCCAGCGuGCcGCAGCCgauCCGg -3'
miRNA:   3'- -UCGGUAGGUCGU-CGcCGUCGGac-GGU- -5'
8791 3' -61.9 NC_002484.1 + 54467 0.68 0.249376
Target:  5'- uAGCCAacgaUCCAggacGCAGCgaaguagccaaGGCGGCCcagGCCGa -3'
miRNA:   3'- -UCGGU----AGGU----CGUCG-----------CCGUCGGa--CGGU- -5'
8791 3' -61.9 NC_002484.1 + 34764 0.68 0.243135
Target:  5'- aGGUCAUCaaguacGCGGCgaugauGGCGGCCUGCUc -3'
miRNA:   3'- -UCGGUAGgu----CGUCG------CCGUCGGACGGu -5'
8791 3' -61.9 NC_002484.1 + 36485 0.69 0.203019
Target:  5'- gAGUCAUCCgcuaucguucAGCGGgGG-AGUCUGCCAc -3'
miRNA:   3'- -UCGGUAGG----------UCGUCgCCgUCGGACGGU- -5'
8791 3' -61.9 NC_002484.1 + 8546 0.7 0.18277
Target:  5'- uGCUGUUUcaugguGCAGCGGCAGaCCUGUCGg -3'
miRNA:   3'- uCGGUAGGu-----CGUCGCCGUC-GGACGGU- -5'
8791 3' -61.9 NC_002484.1 + 18146 0.71 0.143248
Target:  5'- gAGCCAUCCGGCGGCGcauuccguaucGCcacgcccuguuacGGUCUGUCAc -3'
miRNA:   3'- -UCGGUAGGUCGUCGC-----------CG-------------UCGGACGGU- -5'
8791 3' -61.9 NC_002484.1 + 13166 0.75 0.074103
Target:  5'- gAGaCCGUCCAGCGucugcguggugaaauCGGCAGCCUGCUg -3'
miRNA:   3'- -UC-GGUAGGUCGUc--------------GCCGUCGGACGGu -5'
8791 3' -61.9 NC_002484.1 + 1565 1.07 0.000219
Target:  5'- aAGCCAUCCAGCAGCGGCAGCCUGCCAu -3'
miRNA:   3'- -UCGGUAGGUCGUCGCCGUCGGACGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.