Results 1 - 20 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 2129 | 0.69 | 0.502318 |
Target: 5'- aGUCGuCGCCGUcaucaacGCCGGcaaccaGGGCGCg -3' miRNA: 3'- -CGGCuGCGGCG-------UGGCCuuua--CUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 2280 | 1.13 | 0.000468 |
Target: 5'- cGCCGACGCCGCACCGGAAAUGAGCGCc -3' miRNA: 3'- -CGGCUGCGGCGUGGCCUUUACUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 3692 | 0.73 | 0.307115 |
Target: 5'- cGCC-AgGUCGCACUGGAcgcccGAGCGCg -3' miRNA: 3'- -CGGcUgCGGCGUGGCCUuua--CUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 4887 | 0.68 | 0.564901 |
Target: 5'- aGCCaccagGGCGCCGCcagaGCCgucgauGGAGGUgauggccGAGCGCg -3' miRNA: 3'- -CGG-----CUGCGGCG----UGG------CCUUUA-------CUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 8074 | 0.67 | 0.598063 |
Target: 5'- aCCGG-GCuCGCACCGGAAAgcuuGuCGCa -3' miRNA: 3'- cGGCUgCG-GCGUGGCCUUUacu-C-GCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 13475 | 0.69 | 0.503338 |
Target: 5'- aGCCGAagcaGCCGcCGCCGGGGccaacAGCGg -3' miRNA: 3'- -CGGCUg---CGGC-GUGGCCUUuac--UCGCg -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 16949 | 0.66 | 0.673517 |
Target: 5'- gGCCGGCGaaCCGUugCuGuaguUGAGCGUc -3' miRNA: 3'- -CGGCUGC--GGCGugGcCuuu-ACUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 17525 | 0.66 | 0.673517 |
Target: 5'- cGCCGGCGUaggaCGacggaGCUGGAGGcGcGCGCg -3' miRNA: 3'- -CGGCUGCG----GCg----UGGCCUUUaCuCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 18405 | 0.78 | 0.137297 |
Target: 5'- cUCGACGCCGgauaucCACCGGAAAccguuccgucUGGGCGCc -3' miRNA: 3'- cGGCUGCGGC------GUGGCCUUU----------ACUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 19076 | 0.7 | 0.434391 |
Target: 5'- cCCGGCGCCaGCGCUGGuggccaGGGUGUc -3' miRNA: 3'- cGGCUGCGG-CGUGGCCuuua--CUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 26073 | 0.7 | 0.42499 |
Target: 5'- uGCCGAaGCCaaccaGCACCaGGGAGgccAGCGCg -3' miRNA: 3'- -CGGCUgCGG-----CGUGG-CCUUUac-UCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 26588 | 0.66 | 0.694884 |
Target: 5'- cGCUGcCGCCGC-UCGGccagcAGCGCg -3' miRNA: 3'- -CGGCuGCGGCGuGGCCuuuacUCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 26821 | 0.69 | 0.510502 |
Target: 5'- gGCCGGauCGCUGCauGCCGGAGAaucgucugcaugucUGGGaCGUa -3' miRNA: 3'- -CGGCU--GCGGCG--UGGCCUUU--------------ACUC-GCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 28817 | 0.67 | 0.591616 |
Target: 5'- cGCCGAUGCCauGCuaaagGCCaGGAaggaaggagguggggAAUGAGCGa -3' miRNA: 3'- -CGGCUGCGG--CG-----UGG-CCU---------------UUACUCGCg -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 31212 | 0.68 | 0.559593 |
Target: 5'- cGCgGACGCCaGCAUCGacGAUGcaacgguacgcaaguGGCGCg -3' miRNA: 3'- -CGgCUGCGG-CGUGGCcuUUAC---------------UCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 32554 | 0.66 | 0.672444 |
Target: 5'- uGCuCGcCGCCGCGCCcggcaaGGAGguaggucAUGAGUGa -3' miRNA: 3'- -CG-GCuGCGGCGUGG------CCUU-------UACUCGCg -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 32902 | 0.69 | 0.463298 |
Target: 5'- aGCgCGACGCCGCcCUGGcca-GGGuCGCg -3' miRNA: 3'- -CG-GCUGCGGCGuGGCCuuuaCUC-GCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 33031 | 0.66 | 0.673517 |
Target: 5'- aCUGGCGUgagCGCgGCUGcGAGGUGAGCGa -3' miRNA: 3'- cGGCUGCG---GCG-UGGC-CUUUACUCGCg -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 33148 | 0.67 | 0.598063 |
Target: 5'- aGCaGGCGgaGCgGCCGGAGGUGguGGCGUa -3' miRNA: 3'- -CGgCUGCggCG-UGGCCUUUAC--UCGCG- -5' |
|||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 33292 | 0.73 | 0.299722 |
Target: 5'- uGCUGAUGuUCGCGgCGGAuuUGaAGCGCg -3' miRNA: 3'- -CGGCUGC-GGCGUgGCCUuuAC-UCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home