Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8792 | 5' | -56.6 | NC_002484.1 | + | 26588 | 0.66 | 0.694884 |
Target: 5'- cGCUGcCGCCGC-UCGGccagcAGCGCg -3' miRNA: 3'- -CGGCuGCGGCGuGGCCuuuacUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 33417 | 0.7 | 0.453549 |
Target: 5'- cGCCcuGGCGaUCGCAUccucggcgcagaCGGAAcAUGAGCGCg -3' miRNA: 3'- -CGG--CUGC-GGCGUG------------GCCUU-UACUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 42195 | 0.69 | 0.460362 |
Target: 5'- cGCCGACGCCGCccugGCCaagcuggccgaacuGGAAAagcagGAGC-Cg -3' miRNA: 3'- -CGGCUGCGGCG----UGG--------------CCUUUa----CUCGcG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 32902 | 0.69 | 0.463298 |
Target: 5'- aGCgCGACGCCGCcCUGGcca-GGGuCGCg -3' miRNA: 3'- -CG-GCUGCGGCGuGGCCuuuaCUC-GCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 2129 | 0.69 | 0.502318 |
Target: 5'- aGUCGuCGCCGUcaucaacGCCGGcaaccaGGGCGCg -3' miRNA: 3'- -CGGCuGCGGCG-------UGGCCuuua--CUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 13475 | 0.69 | 0.503338 |
Target: 5'- aGCCGAagcaGCCGcCGCCGGGGccaacAGCGg -3' miRNA: 3'- -CGGCUg---CGGC-GUGGCCUUuac--UCGCg -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 26821 | 0.69 | 0.510502 |
Target: 5'- gGCCGGauCGCUGCauGCCGGAGAaucgucugcaugucUGGGaCGUa -3' miRNA: 3'- -CGGCU--GCGGCG--UGGCCUUU--------------ACUC-GCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 52399 | 0.69 | 0.513585 |
Target: 5'- gGCCGAUGCCGgACagcagGGAAAggcucAGCGUc -3' miRNA: 3'- -CGGCUGCGGCgUGg----CCUUUac---UCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 31212 | 0.68 | 0.559593 |
Target: 5'- cGCgGACGCCaGCAUCGacGAUGcaacgguacgcaaguGGCGCg -3' miRNA: 3'- -CGgCUGCGG-CGUGGCcuUUAC---------------UCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 36707 | 0.7 | 0.453549 |
Target: 5'- gGCCGACGa-GCagGCCaGGAuc-GAGCGCg -3' miRNA: 3'- -CGGCUGCggCG--UGG-CCUuuaCUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 41158 | 0.7 | 0.443912 |
Target: 5'- uCCG-CGCgCGC-CCGGAAAUGGaCGCc -3' miRNA: 3'- cGGCuGCG-GCGuGGCCUUUACUcGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 19076 | 0.7 | 0.434391 |
Target: 5'- cCCGGCGCCaGCGCUGGuggccaGGGUGUc -3' miRNA: 3'- cGGCUGCGG-CGUGGCCuuua--CUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 18405 | 0.78 | 0.137297 |
Target: 5'- cUCGACGCCGgauaucCACCGGAAAccguuccgucUGGGCGCc -3' miRNA: 3'- cGGCUGCGGC------GUGGCCUUU----------ACUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 38337 | 0.76 | 0.179688 |
Target: 5'- gGCuCGACGCCGCAgCGGAugcGAGaaaGCa -3' miRNA: 3'- -CG-GCUGCGGCGUgGCCUuuaCUCg--CG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 36995 | 0.75 | 0.23329 |
Target: 5'- cGCCGAagcUGCCGC-CCGcGAGcagaagGAGCGCg -3' miRNA: 3'- -CGGCU---GCGGCGuGGC-CUUua----CUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 33292 | 0.73 | 0.299722 |
Target: 5'- uGCUGAUGuUCGCGgCGGAuuUGaAGCGCg -3' miRNA: 3'- -CGGCUGC-GGCGUgGCCUuuAC-UCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 3692 | 0.73 | 0.307115 |
Target: 5'- cGCC-AgGUCGCACUGGAcgcccGAGCGCg -3' miRNA: 3'- -CGGcUgCGGCGUGGCCUuua--CUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 45906 | 0.71 | 0.388636 |
Target: 5'- aUUGGCGuCCGC-CUGuGggGUGAGUGCg -3' miRNA: 3'- cGGCUGC-GGCGuGGC-CuuUACUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 41685 | 0.71 | 0.397532 |
Target: 5'- gGCCGAgcugcucgcCGCCGCGCCcGGcAAGgaggGGGUGUg -3' miRNA: 3'- -CGGCU---------GCGGCGUGG-CC-UUUa---CUCGCG- -5' |
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8792 | 5' | -56.6 | NC_002484.1 | + | 26073 | 0.7 | 0.42499 |
Target: 5'- uGCCGAaGCCaaccaGCACCaGGGAGgccAGCGCg -3' miRNA: 3'- -CGGCUgCGG-----CGUGG-CCUUUac-UCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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