miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8792 5' -56.6 NC_002484.1 + 2129 0.69 0.502318
Target:  5'- aGUCGuCGCCGUcaucaacGCCGGcaaccaGGGCGCg -3'
miRNA:   3'- -CGGCuGCGGCG-------UGGCCuuua--CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 32902 0.69 0.463298
Target:  5'- aGCgCGACGCCGCcCUGGcca-GGGuCGCg -3'
miRNA:   3'- -CG-GCUGCGGCGuGGCCuuuaCUC-GCG- -5'
8792 5' -56.6 NC_002484.1 + 42195 0.69 0.460362
Target:  5'- cGCCGACGCCGCccugGCCaagcuggccgaacuGGAAAagcagGAGC-Cg -3'
miRNA:   3'- -CGGCUGCGGCG----UGG--------------CCUUUa----CUCGcG- -5'
8792 5' -56.6 NC_002484.1 + 33417 0.7 0.453549
Target:  5'- cGCCcuGGCGaUCGCAUccucggcgcagaCGGAAcAUGAGCGCg -3'
miRNA:   3'- -CGG--CUGC-GGCGUG------------GCCUU-UACUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 36707 0.7 0.453549
Target:  5'- gGCCGACGa-GCagGCCaGGAuc-GAGCGCg -3'
miRNA:   3'- -CGGCUGCggCG--UGG-CCUuuaCUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 41158 0.7 0.443912
Target:  5'- uCCG-CGCgCGC-CCGGAAAUGGaCGCc -3'
miRNA:   3'- cGGCuGCG-GCGuGGCCUUUACUcGCG- -5'
8792 5' -56.6 NC_002484.1 + 19076 0.7 0.434391
Target:  5'- cCCGGCGCCaGCGCUGGuggccaGGGUGUc -3'
miRNA:   3'- cGGCUGCGG-CGUGGCCuuua--CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 26073 0.7 0.42499
Target:  5'- uGCCGAaGCCaaccaGCACCaGGGAGgccAGCGCg -3'
miRNA:   3'- -CGGCUgCGG-----CGUGG-CCUUUac-UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 41685 0.71 0.397532
Target:  5'- gGCCGAgcugcucgcCGCCGCGCCcGGcAAGgaggGGGUGUg -3'
miRNA:   3'- -CGGCU---------GCGGCGUGG-CC-UUUa---CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 45906 0.71 0.388636
Target:  5'- aUUGGCGuCCGC-CUGuGggGUGAGUGCg -3'
miRNA:   3'- cGGCUGC-GGCGuGGC-CuuUACUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 3692 0.73 0.307115
Target:  5'- cGCC-AgGUCGCACUGGAcgcccGAGCGCg -3'
miRNA:   3'- -CGGcUgCGGCGUGGCCUuua--CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 33292 0.73 0.299722
Target:  5'- uGCUGAUGuUCGCGgCGGAuuUGaAGCGCg -3'
miRNA:   3'- -CGGCUGC-GGCGUgGCCUuuAC-UCGCG- -5'
8792 5' -56.6 NC_002484.1 + 36995 0.75 0.23329
Target:  5'- cGCCGAagcUGCCGC-CCGcGAGcagaagGAGCGCg -3'
miRNA:   3'- -CGGCU---GCGGCGuGGC-CUUua----CUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 38337 0.76 0.179688
Target:  5'- gGCuCGACGCCGCAgCGGAugcGAGaaaGCa -3'
miRNA:   3'- -CG-GCUGCGGCGUgGCCUuuaCUCg--CG- -5'
8792 5' -56.6 NC_002484.1 + 18405 0.78 0.137297
Target:  5'- cUCGACGCCGgauaucCACCGGAAAccguuccgucUGGGCGCc -3'
miRNA:   3'- cGGCUGCGGC------GUGGCCUUU----------ACUCGCG- -5'
8792 5' -56.6 NC_002484.1 + 2280 1.13 0.000468
Target:  5'- cGCCGACGCCGCACCGGAAAUGAGCGCc -3'
miRNA:   3'- -CGGCUGCGGCGUGGCCUUUACUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.