miRNA display CGI


Results 1 - 9 of 9 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8793 5' -46.9 NC_002484.1 + 28787 0.66 0.984678
Target:  5'- --aGGAGGUGGGGAaUGAGCGAAgAa -3'
miRNA:   3'- cugUCUUCAUCUCUaGUUCGCUUgUg -5'
8793 5' -46.9 NC_002484.1 + 41531 0.67 0.98229
Target:  5'- aGCGGAAGUGGAuucagcaugccggGAccaUCAAG-GAGCACu -3'
miRNA:   3'- cUGUCUUCAUCU-------------CU---AGUUCgCUUGUG- -5'
8793 5' -46.9 NC_002484.1 + 39927 0.67 0.977521
Target:  5'- gGACAGGAGUugAGcAGAUgGAGCaAGCAg -3'
miRNA:   3'- -CUGUCUUCA--UC-UCUAgUUCGcUUGUg -5'
8793 5' -46.9 NC_002484.1 + 30544 0.67 0.977521
Target:  5'- gGACAGGAGUugAGcAGAUgGAGCaAGCAa -3'
miRNA:   3'- -CUGUCUUCA--UC-UCUAgUUCGcUUGUg -5'
8793 5' -46.9 NC_002484.1 + 41426 0.68 0.97089
Target:  5'- cGACGGcguAGcAGAGAUCAugaagcagcgccGCGAGCGCc -3'
miRNA:   3'- -CUGUCu--UCaUCUCUAGUu-----------CGCUUGUG- -5'
8793 5' -46.9 NC_002484.1 + 11543 0.68 0.956322
Target:  5'- uGCGGAcGGUAGAGAcagugaGAGCGGcaGCGCg -3'
miRNA:   3'- cUGUCU-UCAUCUCUag----UUCGCU--UGUG- -5'
8793 5' -46.9 NC_002484.1 + 4463 0.69 0.946945
Target:  5'- uGCAGcGG-AGAGGUCAggAGCGAcaGCGCc -3'
miRNA:   3'- cUGUCuUCaUCUCUAGU--UCGCU--UGUG- -5'
8793 5' -46.9 NC_002484.1 + 33810 0.69 0.946945
Target:  5'- cGGCAGGAGaAGGGAUU--GUGAGCAa -3'
miRNA:   3'- -CUGUCUUCaUCUCUAGuuCGCUUGUg -5'
8793 5' -46.9 NC_002484.1 + 2534 1.12 0.00465
Target:  5'- gGACAGAAGUAGAGAUCAAGCGAACACa -3'
miRNA:   3'- -CUGUCUUCAUCUCUAGUUCGCUUGUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.