miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8796 5' -60.8 NC_002484.1 + 3693 1.11 0.000219
Target:  5'- gCGCCAGGUCGCACUGGACGCCCGAGCg -3'
miRNA:   3'- -GCGGUCCAGCGUGACCUGCGGGCUCG- -5'
8796 5' -60.8 NC_002484.1 + 19516 0.71 0.212269
Target:  5'- aGCCAGGUCugGCGCaGGgcaaaugucaGCGUgCGAGCg -3'
miRNA:   3'- gCGGUCCAG--CGUGaCC----------UGCGgGCUCG- -5'
8796 5' -60.8 NC_002484.1 + 40526 0.71 0.22896
Target:  5'- gGCuCuGGUCGCGCUGGAUGgCUGccGCa -3'
miRNA:   3'- gCG-GuCCAGCGUGACCUGCgGGCu-CG- -5'
8796 5' -60.8 NC_002484.1 + 49028 0.7 0.259231
Target:  5'- uCGCgUAGGUCGCugagcACcGGGCGCuuauCCGGGCg -3'
miRNA:   3'- -GCG-GUCCAGCG-----UGaCCUGCG----GGCUCG- -5'
8796 5' -60.8 NC_002484.1 + 50750 0.69 0.299775
Target:  5'- uGCCucGGUCGC-CgGGACcagGCCCuGGGCg -3'
miRNA:   3'- gCGGu-CCAGCGuGaCCUG---CGGG-CUCG- -5'
8796 5' -60.8 NC_002484.1 + 29547 0.68 0.321819
Target:  5'- uGCUcGG-CGCuCUGGACGCCCcgGAGa -3'
miRNA:   3'- gCGGuCCaGCGuGACCUGCGGG--CUCg -5'
8796 5' -60.8 NC_002484.1 + 52582 0.68 0.329431
Target:  5'- gCGCCAa---GCAUUGGAUGCCCGcugaagaucagGGCa -3'
miRNA:   3'- -GCGGUccagCGUGACCUGCGGGC-----------UCG- -5'
8796 5' -60.8 NC_002484.1 + 32886 0.68 0.364488
Target:  5'- gGCCAgGGUCGCggagcuugagcugaaACUGGACcaGUCCGAcuacGCc -3'
miRNA:   3'- gCGGU-CCAGCG---------------UGACCUG--CGGGCU----CG- -5'
8796 5' -60.8 NC_002484.1 + 26516 0.67 0.412703
Target:  5'- gGCCAGGcCgGCACcucgaccgcGGGCGCUCGcacGGCa -3'
miRNA:   3'- gCGGUCCaG-CGUGa--------CCUGCGGGC---UCG- -5'
8796 5' -60.8 NC_002484.1 + 19072 0.66 0.430852
Target:  5'- gCGCCA----GCGCUGGugGCCaGGGUg -3'
miRNA:   3'- -GCGGUccagCGUGACCugCGGgCUCG- -5'
8796 5' -60.8 NC_002484.1 + 19309 0.66 0.468504
Target:  5'- cCGCCuGG-CGCAUgcacaUGcGGCGCCCcgGAGUu -3'
miRNA:   3'- -GCGGuCCaGCGUG-----AC-CUGCGGG--CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.