miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8799 3' -51.1 NC_002484.1 + 6671 1.1 0.001959
Target:  5'- cUGGCCUGAAGCAAAAGAAGCACUCCGa -3'
miRNA:   3'- -ACCGGACUUCGUUUUCUUCGUGAGGC- -5'
8799 3' -51.1 NC_002484.1 + 32427 0.74 0.456018
Target:  5'- aGGCCUGAucaAGCAGAAcAGGCGCcUCGg -3'
miRNA:   3'- aCCGGACU---UCGUUUUcUUCGUGaGGC- -5'
8799 3' -51.1 NC_002484.1 + 55253 0.73 0.486482
Target:  5'- cGGCUUGGuggccacAGCAGAGGucgcGCGCUCCa -3'
miRNA:   3'- aCCGGACU-------UCGUUUUCuu--CGUGAGGc -5'
8799 3' -51.1 NC_002484.1 + 42868 0.72 0.564672
Target:  5'- uUGGCUUGAAGgAAgcGAAGUAUgggCCGg -3'
miRNA:   3'- -ACCGGACUUCgUUuuCUUCGUGa--GGC- -5'
8799 3' -51.1 NC_002484.1 + 32734 0.7 0.667506
Target:  5'- aUGGCgaGAAGUGGuGGGAGCAC-CUGg -3'
miRNA:   3'- -ACCGgaCUUCGUUuUCUUCGUGaGGC- -5'
8799 3' -51.1 NC_002484.1 + 1414 0.69 0.730518
Target:  5'- uUGGCCUGcugGAGCugggccaGGAGGAAGUcagggaauaccgacACUCCGu -3'
miRNA:   3'- -ACCGGAC---UUCG-------UUUUCUUCG--------------UGAGGC- -5'
8799 3' -51.1 NC_002484.1 + 43072 0.69 0.745835
Target:  5'- cGGCC-GAAGCGAucaAGGCGCUugCCGa -3'
miRNA:   3'- aCCGGaCUUCGUUuucUUCGUGA--GGC- -5'
8799 3' -51.1 NC_002484.1 + 31936 0.67 0.836936
Target:  5'- cGGCCUGAcggucAGCGAGGGGcuuuugcugGGUAUggCCGc -3'
miRNA:   3'- aCCGGACU-----UCGUUUUCU---------UCGUGa-GGC- -5'
8799 3' -51.1 NC_002484.1 + 226 0.67 0.84604
Target:  5'- gGGCCUu--GCAGAuGGAugGGCGCUUCGc -3'
miRNA:   3'- aCCGGAcuuCGUUU-UCU--UCGUGAGGC- -5'
8799 3' -51.1 NC_002484.1 + 45858 0.66 0.895239
Target:  5'- cGGCgaaaUGAacAGCAauAAGGAGGCucuuccaggaGCUCCGa -3'
miRNA:   3'- aCCGg---ACU--UCGU--UUUCUUCG----------UGAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.