miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8799 5' -57.9 NC_002484.1 + 3576 0.74 0.187418
Target:  5'- cGCGGAcgGCCUGGCUC-UUGUuagauUGACc -3'
miRNA:   3'- cCGCCUuaCGGACCGAGcGACG-----ACUG- -5'
8799 5' -57.9 NC_002484.1 + 5321 0.67 0.483438
Target:  5'- aGGCGG-AUGC--GGUcgauUCGCUGCUcGGCg -3'
miRNA:   3'- -CCGCCuUACGgaCCG----AGCGACGA-CUG- -5'
8799 5' -57.9 NC_002484.1 + 6633 1.11 0.000341
Target:  5'- aGGCGGAAUGCCUGGCUCGCUGCUGACu -3'
miRNA:   3'- -CCGCCUUACGGACCGAGCGACGACUG- -5'
8799 5' -57.9 NC_002484.1 + 29595 0.66 0.534194
Target:  5'- aGGCGGAgaacgagGUGCUgcgcaGGUUCGCcgGCgaGGCa -3'
miRNA:   3'- -CCGCCU-------UACGGa----CCGAGCGa-CGa-CUG- -5'
8799 5' -57.9 NC_002484.1 + 32723 0.7 0.318655
Target:  5'- uGGUGGGAgcaCCUGGaugagcugcgcgaugCGCUGCUGGCc -3'
miRNA:   3'- -CCGCCUUac-GGACCga-------------GCGACGACUG- -5'
8799 5' -57.9 NC_002484.1 + 34597 0.68 0.443784
Target:  5'- cGGCGGAccauUGCCUGGagaaaGUcaugagGCUGACc -3'
miRNA:   3'- -CCGCCUu---ACGGACCgag--CGa-----CGACUG- -5'
8799 5' -57.9 NC_002484.1 + 45891 0.75 0.150974
Target:  5'- uGGgGuGAGUGCguuaUGGCUUGCUGCUGGg -3'
miRNA:   3'- -CCgC-CUUACGg---ACCGAGCGACGACUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.