miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8800 5' -57.9 NC_002484.1 + 6755 1.12 0.000361
Target:  5'- aCCCCCAGGCCGCAUCGAUACGGCAUCa -3'
miRNA:   3'- -GGGGGUCCGGCGUAGCUAUGCCGUAG- -5'
8800 5' -57.9 NC_002484.1 + 17409 0.76 0.151611
Target:  5'- -aCUCGGGCCGCAUCauGUACGGCAg- -3'
miRNA:   3'- ggGGGUCCGGCGUAGc-UAUGCCGUag -5'
8800 5' -57.9 NC_002484.1 + 35838 0.69 0.420986
Target:  5'- gUCCCAuccGCCGacuUCGAUGCGGCAc- -3'
miRNA:   3'- gGGGGUc--CGGCgu-AGCUAUGCCGUag -5'
8800 5' -57.9 NC_002484.1 + 5189 0.68 0.439764
Target:  5'- aCCagcaUCAGGCCGUAaCGAgcGCGcGCAUCg -3'
miRNA:   3'- -GGg---GGUCCGGCGUaGCUa-UGC-CGUAG- -5'
8800 5' -57.9 NC_002484.1 + 438 0.67 0.54003
Target:  5'- uUUCCAGGCCGaacuucuggcgGUCGG-ACGGCGUUa -3'
miRNA:   3'- gGGGGUCCGGCg----------UAGCUaUGCCGUAG- -5'
8800 5' -57.9 NC_002484.1 + 11359 0.66 0.561086
Target:  5'- gUCCCUAGGCUGCGU-GAUGCcauuaccgGGC-UCc -3'
miRNA:   3'- -GGGGGUCCGGCGUAgCUAUG--------CCGuAG- -5'
8800 5' -57.9 NC_002484.1 + 15750 0.66 0.58236
Target:  5'- gCCCUCuguAGGCCGCAgCGAUGaccccaggcccUGGC-UCg -3'
miRNA:   3'- -GGGGG---UCCGGCGUaGCUAU-----------GCCGuAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.