miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8803 5' -61.3 NC_002484.1 + 7451 1.07 0.00042
Target:  5'- aCCGCCGCGCCCACGUUGGCCGCGAAUc -3'
miRNA:   3'- -GGCGGCGCGGGUGCAACCGGCGCUUA- -5'
8803 5' -61.3 NC_002484.1 + 17019 0.66 0.39076
Target:  5'- aCGCCGUgauccgauagcgcaGCCCACGcgGGCCGa---- -3'
miRNA:   3'- gGCGGCG--------------CGGGUGCaaCCGGCgcuua -5'
8803 5' -61.3 NC_002484.1 + 14999 0.67 0.367849
Target:  5'- cCCGCCacCGCCCGCG-UGGCUcUGAc- -3'
miRNA:   3'- -GGCGGc-GCGGGUGCaACCGGcGCUua -5'
8803 5' -61.3 NC_002484.1 + 15552 0.67 0.359601
Target:  5'- cCCGCC-CGCCCuCGguauagaUGGCgGUGAGg -3'
miRNA:   3'- -GGCGGcGCGGGuGCa------ACCGgCGCUUa -5'
8803 5' -61.3 NC_002484.1 + 47867 0.67 0.359601
Target:  5'- cUCGagaCGCGgaaCCACGUUGGCgcCGCGAu- -3'
miRNA:   3'- -GGCg--GCGCg--GGUGCAACCG--GCGCUua -5'
8803 5' -61.3 NC_002484.1 + 32912 0.67 0.342704
Target:  5'- aUCGCUGCucagcgcgacgccGCCCugGccagGGUCGCGGAg -3'
miRNA:   3'- -GGCGGCG-------------CGGGugCaa--CCGGCGCUUa -5'
8803 5' -61.3 NC_002484.1 + 36727 0.69 0.284353
Target:  5'- gCCGCagaGCGCCaACGgcaGGCCGaCGAGc -3'
miRNA:   3'- -GGCGg--CGCGGgUGCaa-CCGGC-GCUUa -5'
8803 5' -61.3 NC_002484.1 + 47949 0.69 0.251649
Target:  5'- aCGCCGUGuCCCGCcuccaGGCUGUGAAg -3'
miRNA:   3'- gGCGGCGC-GGGUGcaa--CCGGCGCUUa -5'
8803 5' -61.3 NC_002484.1 + 47132 0.7 0.233553
Target:  5'- aCGUCGCGgCgCAUGUUGGUCaGCGAGc -3'
miRNA:   3'- gGCGGCGCgG-GUGCAACCGG-CGCUUa -5'
8803 5' -61.3 NC_002484.1 + 41672 0.73 0.135556
Target:  5'- gCCGCCGCGCCCGgcaaggagggggUGUgaUGGCCGUu--- -3'
miRNA:   3'- -GGCGGCGCGGGU------------GCA--ACCGGCGcuua -5'
8803 5' -61.3 NC_002484.1 + 32549 0.66 0.392493
Target:  5'- gCCGCCGCGCCCggcaaggAgGUaGGUCaUGAGUg -3'
miRNA:   3'- -GGCGGCGCGGG-------UgCAaCCGGcGCUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.