miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8804 3' -53.8 NC_002484.1 + 38229 0.66 0.785928
Target:  5'- -gCCGGCCGG---CGCCGAUaucGCCGCu -3'
miRNA:   3'- uaGGUCGGUUaggGUGGCUAa--UGGCG- -5'
8804 3' -53.8 NC_002484.1 + 44969 0.66 0.785928
Target:  5'- ----cGCCAGg-CCACCGAgccgACCGCu -3'
miRNA:   3'- uagguCGGUUagGGUGGCUaa--UGGCG- -5'
8804 3' -53.8 NC_002484.1 + 24476 0.67 0.71235
Target:  5'- cAUCCgcAGCCGcgCUCGCCGuacuugcuCCGCu -3'
miRNA:   3'- -UAGG--UCGGUuaGGGUGGCuaau----GGCG- -5'
8804 3' -53.8 NC_002484.1 + 12847 0.67 0.71235
Target:  5'- gAUCCGGCCAgaucaaucgcaaAUCCUGcCCGAgcagUugCGUu -3'
miRNA:   3'- -UAGGUCGGU------------UAGGGU-GGCUa---AugGCG- -5'
8804 3' -53.8 NC_002484.1 + 48676 0.68 0.668247
Target:  5'- gAUUCuGCagggguAUUCCGCCGAcgGCCGCg -3'
miRNA:   3'- -UAGGuCGgu----UAGGGUGGCUaaUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 13074 0.68 0.641468
Target:  5'- cAUCCAGCCAGUUgCuCUGAgccucauccugaGCCGCg -3'
miRNA:   3'- -UAGGUCGGUUAGgGuGGCUaa----------UGGCG- -5'
8804 3' -53.8 NC_002484.1 + 17012 0.69 0.612406
Target:  5'- gAUCCgauAGCgCAG-CCCacgcggGCCGAUUGCUGCa -3'
miRNA:   3'- -UAGG---UCG-GUUaGGG------UGGCUAAUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 4109 0.69 0.600136
Target:  5'- cUCCAGCCAaucggcuAUCUCAcggagaucauuCCGAUUACCcaugGCg -3'
miRNA:   3'- uAGGUCGGU-------UAGGGU-----------GGCUAAUGG----CG- -5'
8804 3' -53.8 NC_002484.1 + 5806 0.69 0.590121
Target:  5'- -gCCGGCCuuUCUCACgCGAccGCCGUc -3'
miRNA:   3'- uaGGUCGGuuAGGGUG-GCUaaUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 50268 0.69 0.579029
Target:  5'- uUCCGGUC-AUCCCgugagaaaACCGAgagcaACCGCa -3'
miRNA:   3'- uAGGUCGGuUAGGG--------UGGCUaa---UGGCG- -5'
8804 3' -53.8 NC_002484.1 + 53838 0.7 0.546059
Target:  5'- -aCUGGCUAuaacgCCCACUGAacgUUGCCGCc -3'
miRNA:   3'- uaGGUCGGUua---GGGUGGCU---AAUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 15974 0.7 0.544969
Target:  5'- -gUCAGCCAcgcauggaucgucAUCCUgcgGCCGAUcggaUGCCGCu -3'
miRNA:   3'- uaGGUCGGU-------------UAGGG---UGGCUA----AUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 50573 0.7 0.535197
Target:  5'- -gCUGGCCug-CCCACUGAgaaacuguUUGCCGCc -3'
miRNA:   3'- uaGGUCGGuuaGGGUGGCU--------AAUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 46677 0.7 0.524413
Target:  5'- cGUCUAGCCAucaGUCCCACUcca-ACUGCu -3'
miRNA:   3'- -UAGGUCGGU---UAGGGUGGcuaaUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 11483 0.71 0.503102
Target:  5'- aAUCgCAGCC---CCCACCu-UUGCCGCa -3'
miRNA:   3'- -UAG-GUCGGuuaGGGUGGcuAAUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 17747 0.71 0.492588
Target:  5'- cGUCCAGCCGAucgaguUCCUcaagAUCGAgauCCGCa -3'
miRNA:   3'- -UAGGUCGGUU------AGGG----UGGCUaauGGCG- -5'
8804 3' -53.8 NC_002484.1 + 55906 0.71 0.492588
Target:  5'- gAUCCGGCgGGUUCCAgCC--UUGCCGCc -3'
miRNA:   3'- -UAGGUCGgUUAGGGU-GGcuAAUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 52020 0.71 0.461681
Target:  5'- uGUUCGGCCAGUaCCUcgGCCuGAgacUUGCCGCa -3'
miRNA:   3'- -UAGGUCGGUUA-GGG--UGG-CU---AAUGGCG- -5'
8804 3' -53.8 NC_002484.1 + 8389 1.11 0.000984
Target:  5'- gAUCCAGCCAAUCCCACCGAUUACCGCg -3'
miRNA:   3'- -UAGGUCGGUUAGGGUGGCUAAUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.