miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8804 5' -53.9 NC_002484.1 + 8351 1.1 0.001077
Target:  5'- gGAGCAGCGCCAGCAGUUGUUCAACCGg -3'
miRNA:   3'- -CUCGUCGCGGUCGUCAACAAGUUGGC- -5'
8804 5' -53.9 NC_002484.1 + 35554 0.7 0.506751
Target:  5'- uAGCAGCGCCAGgGGUcacaagcUUgAGCCGg -3'
miRNA:   3'- cUCGUCGCGGUCgUCAac-----AAgUUGGC- -5'
8804 5' -53.9 NC_002484.1 + 13492 0.7 0.517464
Target:  5'- gGAGCGGUgauGCCGGCAGccgaagCAGCCGc -3'
miRNA:   3'- -CUCGUCG---CGGUCGUCaacaa-GUUGGC- -5'
8804 5' -53.9 NC_002484.1 + 54869 0.69 0.550109
Target:  5'- cGAGCAGgauCGCCAGCAccagggUCAGCCa -3'
miRNA:   3'- -CUCGUC---GCGGUCGUcaaca-AGUUGGc -5'
8804 5' -53.9 NC_002484.1 + 2186 0.68 0.616992
Target:  5'- aGGUAGagGCCAGUAGcgaUGUUCAugCGa -3'
miRNA:   3'- cUCGUCg-CGGUCGUCa--ACAAGUugGC- -5'
8804 5' -53.9 NC_002484.1 + 3842 0.68 0.639498
Target:  5'- gGAGCgcagAGCGCCAGCAaugcGUUUuGCCGu -3'
miRNA:   3'- -CUCG----UCGCGGUCGUcaa-CAAGuUGGC- -5'
8804 5' -53.9 NC_002484.1 + 34338 0.67 0.673176
Target:  5'- aAGCAGguaGaCCAGCAGUUGUagcgCGACgGg -3'
miRNA:   3'- cUCGUCg--C-GGUCGUCAACAa---GUUGgC- -5'
8804 5' -53.9 NC_002484.1 + 4670 0.66 0.749783
Target:  5'- uGGGCAGU--CAGCAGUUcgUCGACCu -3'
miRNA:   3'- -CUCGUCGcgGUCGUCAAcaAGUUGGc -5'
8804 5' -53.9 NC_002484.1 + 27724 0.66 0.760324
Target:  5'- cGAGCcgcGCGCgGGCAGaaGUUUGGCCc -3'
miRNA:   3'- -CUCGu--CGCGgUCGUCaaCAAGUUGGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.