miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8806 5' -54.3 NC_002484.1 + 29579 0.65 0.778496
Target:  5'- gCUGCGCAgguUCGCCGGCgaggcauaucaaGUGCUcgGCGCu -3'
miRNA:   3'- -GGCGUGU---AGUGGUCGag----------UACGG--UGUG- -5'
8806 5' -54.3 NC_002484.1 + 10330 0.66 0.772397
Target:  5'- aCGCcUGUC-CCGGCgugcgCAgGCCGCGCa -3'
miRNA:   3'- gGCGuGUAGuGGUCGa----GUaCGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 31161 0.66 0.750646
Target:  5'- uCUGCGCAacggaggUCACCGGUUCAUcGUCgGCAa -3'
miRNA:   3'- -GGCGUGU-------AGUGGUCGAGUA-CGG-UGUg -5'
8806 5' -54.3 NC_002484.1 + 518 0.67 0.697962
Target:  5'- aCG-ACAUCGCUAGCguacUGUCGCGCa -3'
miRNA:   3'- gGCgUGUAGUGGUCGagu-ACGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 27898 0.67 0.696866
Target:  5'- gCCgGCGCAUCcCCGGCaacCAUcaaccgagaacucGCCGCACu -3'
miRNA:   3'- -GG-CGUGUAGuGGUCGa--GUA-------------CGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 26131 0.67 0.675928
Target:  5'- cUCGCgGCAUCcaacugcgGCCGGUa-GUGCCGCGCg -3'
miRNA:   3'- -GGCG-UGUAG--------UGGUCGagUACGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 50937 0.68 0.642584
Target:  5'- -aGUACuUgGCCAGCcCAcgaaUGCCACGCa -3'
miRNA:   3'- ggCGUGuAgUGGUCGaGU----ACGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 17062 0.68 0.631436
Target:  5'- cCCGCACugGUCAgCcGCUCGacggugaguUGCUGCGCg -3'
miRNA:   3'- -GGCGUG--UAGUgGuCGAGU---------ACGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 30967 0.68 0.620288
Target:  5'- gCGCACcUCACCAGCUCcuucauUGgCugAUc -3'
miRNA:   3'- gGCGUGuAGUGGUCGAGu-----ACgGugUG- -5'
8806 5' -54.3 NC_002484.1 + 36616 0.69 0.564899
Target:  5'- gCC-CugAUCGCCGGCggCAUGCCcggggaauGCGCc -3'
miRNA:   3'- -GGcGugUAGUGGUCGa-GUACGG--------UGUG- -5'
8806 5' -54.3 NC_002484.1 + 38347 0.69 0.564899
Target:  5'- aUGCGC--CGCCGGCUCGacGCCGCAg -3'
miRNA:   3'- gGCGUGuaGUGGUCGAGUa-CGGUGUg -5'
8806 5' -54.3 NC_002484.1 + 1623 0.7 0.532263
Target:  5'- cCCGCcuucucgaacaGCAUCACCAGggCG-GCCACGu -3'
miRNA:   3'- -GGCG-----------UGUAGUGGUCgaGUaCGGUGUg -5'
8806 5' -54.3 NC_002484.1 + 54300 0.71 0.469273
Target:  5'- aCCGCAC--CACuCGGCUCG-GCCAUAUu -3'
miRNA:   3'- -GGCGUGuaGUG-GUCGAGUaCGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 38221 0.73 0.364855
Target:  5'- gCGCcgAUAUCGCCGcuguGCUCGgccUGCCGCGCg -3'
miRNA:   3'- gGCG--UGUAGUGGU----CGAGU---ACGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 18244 0.73 0.35619
Target:  5'- gCCGggaACAUCGCCGGCaaggGCCACAUa -3'
miRNA:   3'- -GGCg--UGUAGUGGUCGaguaCGGUGUG- -5'
8806 5' -54.3 NC_002484.1 + 11041 1.11 0.000882
Target:  5'- cCCGCACAUCACCAGCUCAUGCCACACc -3'
miRNA:   3'- -GGCGUGUAGUGGUCGAGUACGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.