Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8808 | 5' | -60.8 | NC_002484.1 | + | 9513 | 0.66 | 0.387657 |
Target: 5'- aGuGCGGCGUCGGggcauUCGCAGUCUUguCCg -3' miRNA: 3'- aC-CGUCGCGGUU-----AGCGUCGGGGguGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 6549 | 0.66 | 0.405361 |
Target: 5'- uUGGCAG-GCCucGUCuuCGGCCCCU-CCa -3' miRNA: 3'- -ACCGUCgCGGu-UAGc-GUCGGGGGuGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 6956 | 0.66 | 0.431918 |
Target: 5'- cUGGCAGUggucuccGCCug-CGUAGCgUCCGCa -3' miRNA: 3'- -ACCGUCG-------CGGuuaGCGUCGgGGGUGg -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 40417 | 0.66 | 0.432851 |
Target: 5'- gUGGCGGCGCUgcuuUCGUcgGGCCgCUgACUc -3' miRNA: 3'- -ACCGUCGCGGuu--AGCG--UCGG-GGgUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 52212 | 0.67 | 0.378997 |
Target: 5'- aGGCcgauGCGCuCGAUCa-AGCCCUCACg -3' miRNA: 3'- aCCGu---CGCG-GUUAGcgUCGGGGGUGg -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 8412 | 0.67 | 0.337683 |
Target: 5'- uUGGCGGCaauGCUggcuggaacGAUC-CAGCCaauCCCACCg -3' miRNA: 3'- -ACCGUCG---CGG---------UUAGcGUCGG---GGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 18138 | 0.67 | 0.335311 |
Target: 5'- cGGCGGCGCauuccguAUCGCcacGCCCUguuacggucugucaCGCCg -3' miRNA: 3'- aCCGUCGCGgu-----UAGCGu--CGGGG--------------GUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 8822 | 0.67 | 0.345678 |
Target: 5'- ---uGGCGCCGgaAUCGgugacgaaaCGGCCUCCGCCg -3' miRNA: 3'- accgUCGCGGU--UAGC---------GUCGGGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 14009 | 0.67 | 0.378997 |
Target: 5'- -aGCAuUGCCucacuGUCGUugAGCCUCCACCu -3' miRNA: 3'- acCGUcGCGGu----UAGCG--UCGGGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 44477 | 0.68 | 0.299745 |
Target: 5'- gGGCGGCGCCGucaGCuaccgagacGGCCCUCgaauacggucGCCa -3' miRNA: 3'- aCCGUCGCGGUuagCG---------UCGGGGG----------UGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 32768 | 0.68 | 0.329824 |
Target: 5'- gGGCaugacaguGGCGCCAAUC-UGGCUCaCCGCUa -3' miRNA: 3'- aCCG--------UCGCGGUUAGcGUCGGG-GGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 52092 | 0.68 | 0.329824 |
Target: 5'- aGGCGGUGCUcgg-GCcuuGCCCCCuuGCCg -3' miRNA: 3'- aCCGUCGCGGuuagCGu--CGGGGG--UGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 45223 | 0.68 | 0.292565 |
Target: 5'- aGGCAGUaucccuGCCugggaGCAGCaCCCUACUa -3' miRNA: 3'- aCCGUCG------CGGuuag-CGUCG-GGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 38227 | 0.68 | 0.292565 |
Target: 5'- cGGcCGGCGCCGAuaUCGCcGCUgugcucggCCUGCCg -3' miRNA: 3'- aCC-GUCGCGGUU--AGCGuCGG--------GGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 16891 | 0.68 | 0.3221 |
Target: 5'- aGGUAGagGCCGccGUUGguGCCgaCCACCu -3' miRNA: 3'- aCCGUCg-CGGU--UAGCguCGGg-GGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 4443 | 0.69 | 0.258676 |
Target: 5'- cGaCAGCGCCAggcauaucgGUCGgGGugucaccaCCCCCGCCa -3' miRNA: 3'- aCcGUCGCGGU---------UAGCgUC--------GGGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 37095 | 0.69 | 0.285519 |
Target: 5'- aGGCAGCccguaCCAAggGCaaGGCCCUgGCCg -3' miRNA: 3'- aCCGUCGc----GGUUagCG--UCGGGGgUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 1551 | 0.69 | 0.258032 |
Target: 5'- cGGCAGCcuGCCAuGUCGCAaucgugaagucgcGCUUCUGCCg -3' miRNA: 3'- aCCGUCG--CGGU-UAGCGU-------------CGGGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 14738 | 0.69 | 0.263875 |
Target: 5'- -cGCAGCGCgGcgguauugaugagGUCGUaguagccGGCCUCCACCu -3' miRNA: 3'- acCGUCGCGgU-------------UAGCG-------UCGGGGGUGG- -5' |
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8808 | 5' | -60.8 | NC_002484.1 | + | 8736 | 0.69 | 0.278608 |
Target: 5'- cGGCAcugaGUCAG-CGCAGCgCCCAUCg -3' miRNA: 3'- aCCGUcg--CGGUUaGCGUCGgGGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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