miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8812 3' -53.4 NC_002484.1 + 33361 0.66 0.800996
Target:  5'- aAGCGCuCGGCGAgugcaUCGAagcUGCCgGCAu -3'
miRNA:   3'- gUCGUG-GCCGUU-----AGCUga-ACGGaUGU- -5'
8812 3' -53.4 NC_002484.1 + 34913 0.66 0.791076
Target:  5'- aAGCGCCGGcCAGaCGACacccagGCCgGCGa -3'
miRNA:   3'- gUCGUGGCC-GUUaGCUGaa----CGGaUGU- -5'
8812 3' -53.4 NC_002484.1 + 37884 0.66 0.780983
Target:  5'- ---uGCCGGCAggCGGC-UGCCaGCAu -3'
miRNA:   3'- gucgUGGCCGUuaGCUGaACGGaUGU- -5'
8812 3' -53.4 NC_002484.1 + 52013 0.66 0.780983
Target:  5'- cCAGUACCucGGCcugaGACUUGCC-GCAg -3'
miRNA:   3'- -GUCGUGG--CCGuuagCUGAACGGaUGU- -5'
8812 3' -53.4 NC_002484.1 + 34756 0.66 0.770728
Target:  5'- aAGUACgCGGCGAU-GAUggcgGCCUGCu -3'
miRNA:   3'- gUCGUG-GCCGUUAgCUGaa--CGGAUGu -5'
8812 3' -53.4 NC_002484.1 + 28419 0.66 0.770728
Target:  5'- gCGGcCGCCGGCAuucUCGGCgugaGCC-GCAg -3'
miRNA:   3'- -GUC-GUGGCCGUu--AGCUGaa--CGGaUGU- -5'
8812 3' -53.4 NC_002484.1 + 51837 0.67 0.706489
Target:  5'- -cGCGCCGGCuuggCGuGCUUGuCCUugAu -3'
miRNA:   3'- guCGUGGCCGuua-GC-UGAAC-GGAugU- -5'
8812 3' -53.4 NC_002484.1 + 3834 0.68 0.684336
Target:  5'- gAGCGCCaGCAAUgCGuuUUGCCgugACAc -3'
miRNA:   3'- gUCGUGGcCGUUA-GCugAACGGa--UGU- -5'
8812 3' -53.4 NC_002484.1 + 42254 0.69 0.604631
Target:  5'- aAGCGCUGGCGAgaacaguUCGAC-UGCaUGCAa -3'
miRNA:   3'- gUCGUGGCCGUU-------AGCUGaACGgAUGU- -5'
8812 3' -53.4 NC_002484.1 + 39828 0.78 0.192906
Target:  5'- uCAGCAUCGGCAGcaagggCGACUgguaugccuuUGCCUGCGa -3'
miRNA:   3'- -GUCGUGGCCGUUa-----GCUGA----------ACGGAUGU- -5'
8812 3' -53.4 NC_002484.1 + 12234 1.09 0.001462
Target:  5'- gCAGCACCGGCAAUCGACUUGCCUACAa -3'
miRNA:   3'- -GUCGUGGCCGUUAGCUGAACGGAUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.