Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8812 | 3' | -53.4 | NC_002484.1 | + | 33361 | 0.66 | 0.800996 |
Target: 5'- aAGCGCuCGGCGAgugcaUCGAagcUGCCgGCAu -3' miRNA: 3'- gUCGUG-GCCGUU-----AGCUga-ACGGaUGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 34913 | 0.66 | 0.791076 |
Target: 5'- aAGCGCCGGcCAGaCGACacccagGCCgGCGa -3' miRNA: 3'- gUCGUGGCC-GUUaGCUGaa----CGGaUGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 37884 | 0.66 | 0.780983 |
Target: 5'- ---uGCCGGCAggCGGC-UGCCaGCAu -3' miRNA: 3'- gucgUGGCCGUuaGCUGaACGGaUGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 52013 | 0.66 | 0.780983 |
Target: 5'- cCAGUACCucGGCcugaGACUUGCC-GCAg -3' miRNA: 3'- -GUCGUGG--CCGuuagCUGAACGGaUGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 34756 | 0.66 | 0.770728 |
Target: 5'- aAGUACgCGGCGAU-GAUggcgGCCUGCu -3' miRNA: 3'- gUCGUG-GCCGUUAgCUGaa--CGGAUGu -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 28419 | 0.66 | 0.770728 |
Target: 5'- gCGGcCGCCGGCAuucUCGGCgugaGCC-GCAg -3' miRNA: 3'- -GUC-GUGGCCGUu--AGCUGaa--CGGaUGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 51837 | 0.67 | 0.706489 |
Target: 5'- -cGCGCCGGCuuggCGuGCUUGuCCUugAu -3' miRNA: 3'- guCGUGGCCGuua-GC-UGAAC-GGAugU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 3834 | 0.68 | 0.684336 |
Target: 5'- gAGCGCCaGCAAUgCGuuUUGCCgugACAc -3' miRNA: 3'- gUCGUGGcCGUUA-GCugAACGGa--UGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 42254 | 0.69 | 0.604631 |
Target: 5'- aAGCGCUGGCGAgaacaguUCGAC-UGCaUGCAa -3' miRNA: 3'- gUCGUGGCCGUU-------AGCUGaACGgAUGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 39828 | 0.78 | 0.192906 |
Target: 5'- uCAGCAUCGGCAGcaagggCGACUgguaugccuuUGCCUGCGa -3' miRNA: 3'- -GUCGUGGCCGUUa-----GCUGA----------ACGGAUGU- -5' |
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8812 | 3' | -53.4 | NC_002484.1 | + | 12234 | 1.09 | 0.001462 |
Target: 5'- gCAGCACCGGCAAUCGACUUGCCUACAa -3' miRNA: 3'- -GUCGUGGCCGUUAGCUGAACGGAUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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