Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8812 | 5' | -57.9 | NC_002484.1 | + | 15580 | 0.66 | 0.567042 |
Target: 5'- aGGCcCCAGCAGUcaaugcacggcagGGCccgcCCGCC-CUCg -3' miRNA: 3'- -CCGaGGUUGUCA-------------CCGau--GGCGGcGAG- -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 40527 | 0.66 | 0.557421 |
Target: 5'- cGGCUCUggUcgcgcuGGaUGGCUGCCGCauguGCg- -3' miRNA: 3'- -CCGAGGuuG------UC-ACCGAUGGCGg---CGag -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 19119 | 0.67 | 0.525721 |
Target: 5'- cGUUCaAGCGGUcGGCUACgGUgCGCUCg -3' miRNA: 3'- cCGAGgUUGUCA-CCGAUGgCG-GCGAG- -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 40317 | 0.67 | 0.515303 |
Target: 5'- cGCgauaGAcCAGUGGa-ACCGCCGCUCc -3' miRNA: 3'- cCGagg-UU-GUCACCgaUGGCGGCGAG- -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 35731 | 0.68 | 0.464589 |
Target: 5'- gGGCUcCCAGgAGUGGCUugaCGCgCGuCUUg -3' miRNA: 3'- -CCGA-GGUUgUCACCGAug-GCG-GC-GAG- -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 17047 | 0.68 | 0.464589 |
Target: 5'- cGCU-CGACGGUGaGUUGCUGCgCGCUg -3' miRNA: 3'- cCGAgGUUGUCAC-CGAUGGCG-GCGAg -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 26301 | 0.68 | 0.425958 |
Target: 5'- gGGCUCCGGCAuacugcuccGcGGcCUGCUGCCGUc- -3' miRNA: 3'- -CCGAGGUUGU---------CaCC-GAUGGCGGCGag -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 30353 | 0.7 | 0.330331 |
Target: 5'- cGGCUCUGAgGGUGGaguUGCCGgaUGCUCu -3' miRNA: 3'- -CCGAGGUUgUCACCg--AUGGCg-GCGAG- -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 26620 | 0.78 | 0.098917 |
Target: 5'- uGGCagCCAGCAGUuggGccucauacccgauccGCUGCCGCCGCUCg -3' miRNA: 3'- -CCGa-GGUUGUCA---C---------------CGAUGGCGGCGAG- -5' |
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8812 | 5' | -57.9 | NC_002484.1 | + | 12200 | 1.1 | 0.000409 |
Target: 5'- aGGCUCCAACAGUGGCUACCGCCGCUCc -3' miRNA: 3'- -CCGAGGUUGUCACCGAUGGCGGCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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