miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8812 5' -57.9 NC_002484.1 + 15580 0.66 0.567042
Target:  5'- aGGCcCCAGCAGUcaaugcacggcagGGCccgcCCGCC-CUCg -3'
miRNA:   3'- -CCGaGGUUGUCA-------------CCGau--GGCGGcGAG- -5'
8812 5' -57.9 NC_002484.1 + 40527 0.66 0.557421
Target:  5'- cGGCUCUggUcgcgcuGGaUGGCUGCCGCauguGCg- -3'
miRNA:   3'- -CCGAGGuuG------UC-ACCGAUGGCGg---CGag -5'
8812 5' -57.9 NC_002484.1 + 19119 0.67 0.525721
Target:  5'- cGUUCaAGCGGUcGGCUACgGUgCGCUCg -3'
miRNA:   3'- cCGAGgUUGUCA-CCGAUGgCG-GCGAG- -5'
8812 5' -57.9 NC_002484.1 + 40317 0.67 0.515303
Target:  5'- cGCgauaGAcCAGUGGa-ACCGCCGCUCc -3'
miRNA:   3'- cCGagg-UU-GUCACCgaUGGCGGCGAG- -5'
8812 5' -57.9 NC_002484.1 + 35731 0.68 0.464589
Target:  5'- gGGCUcCCAGgAGUGGCUugaCGCgCGuCUUg -3'
miRNA:   3'- -CCGA-GGUUgUCACCGAug-GCG-GC-GAG- -5'
8812 5' -57.9 NC_002484.1 + 17047 0.68 0.464589
Target:  5'- cGCU-CGACGGUGaGUUGCUGCgCGCUg -3'
miRNA:   3'- cCGAgGUUGUCAC-CGAUGGCG-GCGAg -5'
8812 5' -57.9 NC_002484.1 + 26301 0.68 0.425958
Target:  5'- gGGCUCCGGCAuacugcuccGcGGcCUGCUGCCGUc- -3'
miRNA:   3'- -CCGAGGUUGU---------CaCC-GAUGGCGGCGag -5'
8812 5' -57.9 NC_002484.1 + 30353 0.7 0.330331
Target:  5'- cGGCUCUGAgGGUGGaguUGCCGgaUGCUCu -3'
miRNA:   3'- -CCGAGGUUgUCACCg--AUGGCg-GCGAG- -5'
8812 5' -57.9 NC_002484.1 + 26620 0.78 0.098917
Target:  5'- uGGCagCCAGCAGUuggGccucauacccgauccGCUGCCGCCGCUCg -3'
miRNA:   3'- -CCGa-GGUUGUCA---C---------------CGAUGGCGGCGAG- -5'
8812 5' -57.9 NC_002484.1 + 12200 1.1 0.000409
Target:  5'- aGGCUCCAACAGUGGCUACCGCCGCUCc -3'
miRNA:   3'- -CCGAGGUUGUCACCGAUGGCGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.