miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8817 3' -48 NC_002484.1 + 45656 0.66 0.978836
Target:  5'- gCCGAUG-GCGACAGCAUggagccuuacauaUUCgagggagauguGGUCCu -3'
miRNA:   3'- gGGUUACgUGUUGUCGUA-------------AAG-----------CCAGG- -5'
8817 3' -48 NC_002484.1 + 17403 0.67 0.963382
Target:  5'- gCCGcaucAUGUACGGCAGCGggaugCcGUCCg -3'
miRNA:   3'- gGGU----UACGUGUUGUCGUaaa--GcCAGG- -5'
8817 3' -48 NC_002484.1 + 14740 0.68 0.950747
Target:  5'- gCCGcaGCGCGGCGGUAUUgaugaGGUCg -3'
miRNA:   3'- gGGUuaCGUGUUGUCGUAAag---CCAGg -5'
8817 3' -48 NC_002484.1 + 31579 0.69 0.929802
Target:  5'- aCCCAGUGCAggagcgcauggcCGAUAGC-UUUgGGUUg -3'
miRNA:   3'- -GGGUUACGU------------GUUGUCGuAAAgCCAGg -5'
8817 3' -48 NC_002484.1 + 54892 0.69 0.923814
Target:  5'- cCCCcGUGCACGACAGaCAa---GG-CCg -3'
miRNA:   3'- -GGGuUACGUGUUGUC-GUaaagCCaGG- -5'
8817 3' -48 NC_002484.1 + 26954 0.71 0.873557
Target:  5'- uUCCGu--CACGGcCAGCAUUcagCGGUCCg -3'
miRNA:   3'- -GGGUuacGUGUU-GUCGUAAa--GCCAGG- -5'
8817 3' -48 NC_002484.1 + 53866 0.71 0.865237
Target:  5'- aCCGGUGCugAAucCGGCAUggCGGUg- -3'
miRNA:   3'- gGGUUACGugUU--GUCGUAaaGCCAgg -5'
8817 3' -48 NC_002484.1 + 34003 0.71 0.865237
Target:  5'- gCCCAggGCGCcgaaGGCGUUcUGGUCUa -3'
miRNA:   3'- -GGGUuaCGUGuug-UCGUAAaGCCAGG- -5'
8817 3' -48 NC_002484.1 + 19990 0.74 0.725576
Target:  5'- gCCAA-GCGCGACAGCGUgccUGGUUg -3'
miRNA:   3'- gGGUUaCGUGUUGUCGUAaa-GCCAGg -5'
8817 3' -48 NC_002484.1 + 41273 0.74 0.699784
Target:  5'- gUCGAUGCagACGACuggcugaucguugaGGCcgUUCGGUCCg -3'
miRNA:   3'- gGGUUACG--UGUUG--------------UCGuaAAGCCAGG- -5'
8817 3' -48 NC_002484.1 + 16441 1.17 0.002045
Target:  5'- gCCCAAUGCACAACAGCAUUUCGGUCCa -3'
miRNA:   3'- -GGGUUACGUGUUGUCGUAAAGCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.