miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8818 5' -57.1 NC_002484.1 + 5350 0.66 0.642021
Target:  5'- -aCUCGGCCAGuUGCgccugaaggauCGCCAGGCgGAu -3'
miRNA:   3'- agGAGUUGGUCcACG-----------GUGGUCUGgCU- -5'
8818 5' -57.1 NC_002484.1 + 26062 0.66 0.620259
Target:  5'- aCCagC-ACCAGGgagGCCAgCGcGACCGAu -3'
miRNA:   3'- aGGa-GuUGGUCCa--CGGUgGU-CUGGCU- -5'
8818 5' -57.1 NC_002484.1 + 55567 0.66 0.609389
Target:  5'- cUCC-CGGCCAGGgaguggGCUuUCGGGCCGc -3'
miRNA:   3'- -AGGaGUUGGUCCa-----CGGuGGUCUGGCu -5'
8818 5' -57.1 NC_002484.1 + 48356 0.66 0.598538
Target:  5'- -aCUC-ACCGuuGGUGCCGCCAGcauCCa- -3'
miRNA:   3'- agGAGuUGGU--CCACGGUGGUCu--GGcu -5'
8818 5' -57.1 NC_002484.1 + 4899 0.67 0.576928
Target:  5'- gCgaCGAUCAGGaGCCACCAGggcGCCGc -3'
miRNA:   3'- aGgaGUUGGUCCaCGGUGGUC---UGGCu -5'
8818 5' -57.1 NC_002484.1 + 8864 0.67 0.566186
Target:  5'- cCCUCAGCCAa--GCCACCGcuuCCGGa -3'
miRNA:   3'- aGGAGUUGGUccaCGGUGGUcu-GGCU- -5'
8818 5' -57.1 NC_002484.1 + 28614 0.67 0.555496
Target:  5'- aCC-CAGCCGGGcGCCACUAGcucuccCUGAg -3'
miRNA:   3'- aGGaGUUGGUCCaCGGUGGUCu-----GGCU- -5'
8818 5' -57.1 NC_002484.1 + 42775 0.67 0.523812
Target:  5'- gUCCUggaaCGGCCAGGgccUGCCGCCGgugggcacgcuGugCGAg -3'
miRNA:   3'- -AGGA----GUUGGUCC---ACGGUGGU-----------CugGCU- -5'
8818 5' -57.1 NC_002484.1 + 20263 0.68 0.472671
Target:  5'- aUUCUCGAUggugUAGGUGCCACCGuauacuuCCGAu -3'
miRNA:   3'- -AGGAGUUG----GUCCACGGUGGUcu-----GGCU- -5'
8818 5' -57.1 NC_002484.1 + 7463 0.69 0.413906
Target:  5'- ----aAGCCAGGUGCCACCGccgcgcccacguuGGCCGc -3'
miRNA:   3'- aggagUUGGUCCACGGUGGU-------------CUGGCu -5'
8818 5' -57.1 NC_002484.1 + 15784 0.72 0.298231
Target:  5'- aCCUCGACCAGcagGCCuACguGAUCGAg -3'
miRNA:   3'- aGGAGUUGGUCca-CGG-UGguCUGGCU- -5'
8818 5' -57.1 NC_002484.1 + 16589 1.09 0.000669
Target:  5'- uUCCUCAACCAGGUGCCACCAGACCGAu -3'
miRNA:   3'- -AGGAGUUGGUCCACGGUGGUCUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.